Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0309
         (603 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.0  
U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    21   7.0  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               21   7.0  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   7.0  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   9.3  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   9.3  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
 Frame = +3

Query: 399 QPQGQQREDDPDHVRNIQHARHVRRHPSRALAVRVRSTTGIRAGLPRRCLPHR-AHLRGI 575
           QP    + D     R+ +    V+  P  A  V    T      LP+ CLP R A L G+
Sbjct: 440 QPPLSPQSDSSSSSRSAESPMSVQVDPMAASVVAAALTGTYPTLLPQWCLPPREAPLVGV 499

Query: 576 R 578
           +
Sbjct: 500 Q 500


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 349  LRVAPEEHPVLLTEAPLNPKANREKM 426
            LR+ P  H V+ T   +NP  + EK+
Sbjct: 1461 LRLGPCWHAVMTTYPRINPDNHNEKL 1486


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -2

Query: 545 TPSRESSTNTGGRPNAYSESTA 480
           TP++++ TN GG+P A  +S+A
Sbjct: 887 TPAKKA-TNIGGKPVAVVKSSA 907


>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 504 ERVQREHGLDGDVHGG 457
           +RV  ++G+ GD +GG
Sbjct: 62  QRVYDKNGMTGDAYGG 77


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -3

Query: 256 LFALCLISYIRV 221
           LF LC++SY+ V
Sbjct: 8   LFTLCIVSYMMV 19


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 113 GMCKAGFAGD 142
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 501 VRSTTGIRAGLPRRCLPHRAHL 566
           V +T+G+  G PR  L    H+
Sbjct: 40  VETTSGLVRGFPRTVLDKEVHV 61


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 501 VRSTTGIRAGLPRRCLPHRAHL 566
           V +T+G+  G PR  L    H+
Sbjct: 40  VETTSGLVRGFPRTVLDKEVHV 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,607
Number of Sequences: 438
Number of extensions: 4282
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)