Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0309
(603 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496... 226 8e-60
At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494 A... 226 1e-59
At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497... 226 1e-59
At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to S... 224 3e-59
At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493 A... 223 5e-59
At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671 A... 223 5e-59
At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292 A... 221 3e-58
At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292 A... 221 3e-58
At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293 A... 221 3e-58
At2g42100.1 68415.m05205 actin, putative very strong similarity ... 207 5e-54
At2g42170.1 68415.m05219 actin, putative similar to actin 2 [Ara... 192 1e-49
At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Ac... 190 6e-49
At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly i... 141 3e-34
At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identica... 106 1e-23
At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary id... 98 5e-21
At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identica... 76 2e-14
At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly i... 63 2e-10
At1g73910.1 68414.m08559 actin-related protein 5 (ARP5) identica... 62 2e-10
At3g12380.1 68416.m01543 actin/actin-like family protein similar... 49 3e-06
At5g01040.1 68418.m00007 laccase family protein / diphenol oxida... 34 0.083
At5g56180.2 68418.m07009 actin-related protein, putative (ARP8) ... 30 1.0
At5g56180.1 68418.m07008 actin-related protein, putative (ARP8) ... 30 1.0
At3g07870.1 68416.m00962 F-box family protein contains F-box dom... 26 1.7
At3g05690.1 68416.m00636 CCAAT-binding transcription factor (CBF... 29 1.8
At1g16690.2 68414.m01999 transcription factor-related similar to... 29 3.1
At1g16690.1 68414.m01998 transcription factor-related similar to... 29 3.1
At5g17420.1 68418.m02044 cellulose synthase, catalytic subunit (... 28 4.1
At3g63400.2 68416.m07138 peptidyl-prolyl cis-trans isomerase cyc... 28 5.5
At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase cyc... 28 5.5
At5g06610.1 68418.m00747 expressed protein contains Pfam profile... 27 7.2
At2g38330.1 68415.m04709 MATE efflux family protein low similari... 27 9.6
At2g31900.1 68415.m03897 myosin family protein contains Pfam pro... 27 9.6
>At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496
Actin 11 {Arabidopsis thaliana}
Length = 377
Score = 226 bits (553), Expect = 8e-60
Identities = 105/116 (90%), Positives = 108/116 (93%)
Frame = +1
Query: 250 QKGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 429
++GILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 63 KRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 122
Query: 430 QIMFETFNTPAMYVAIQAVLSLYAFGLPPVFVLDSRDGVFHTVPIYEGYALPHAIL 597
QIMFETFNTPAMYVAIQAVLSLYA G VLDS DGV HTVPIYEGYALPHAIL
Sbjct: 123 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAIL 178
Score = 107 bits (256), Expect = 7e-24
Identities = 48/57 (84%), Positives = 52/57 (91%)
Frame = +2
Query: 77 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 247
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQ
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQ 61
>At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494
Actin 4 {Arabidopsis thaliana}
Length = 377
Score = 226 bits (552), Expect = 1e-59
Identities = 105/116 (90%), Positives = 107/116 (92%)
Frame = +1
Query: 250 QKGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 429
++GILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 63 KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 122
Query: 430 QIMFETFNTPAMYVAIQAVLSLYAFGLPPVFVLDSRDGVFHTVPIYEGYALPHAIL 597
QIMFETFNTPAMYVAIQAVLSLYA G VLDS DGV HTVPIYEGYALPHAIL
Sbjct: 123 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAIL 178
Score = 107 bits (256), Expect = 7e-24
Identities = 48/57 (84%), Positives = 52/57 (91%)
Frame = +2
Query: 77 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 247
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQ
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQ 61
>At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497
Actin 12 {Arabidopsis thaliana}
Length = 377
Score = 226 bits (552), Expect = 1e-59
Identities = 105/116 (90%), Positives = 107/116 (92%)
Frame = +1
Query: 250 QKGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 429
++GILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 63 KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 122
Query: 430 QIMFETFNTPAMYVAIQAVLSLYAFGLPPVFVLDSRDGVFHTVPIYEGYALPHAIL 597
QIMFETFNTPAMYVAIQAVLSLYA G VLDS DGV HTVPIYEGYALPHAIL
Sbjct: 123 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAIL 178
Score = 107 bits (256), Expect = 7e-24
Identities = 48/57 (84%), Positives = 52/57 (91%)
Frame = +2
Query: 77 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 247
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQ
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQ 61
>At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to
SP|P53492 Actin 7 (Actin-2) {Arabidopsis thaliana}
Length = 377
Score = 224 bits (548), Expect = 3e-59
Identities = 104/116 (89%), Positives = 107/116 (92%)
Frame = +1
Query: 250 QKGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 429
++GILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 63 KRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 122
Query: 430 QIMFETFNTPAMYVAIQAVLSLYAFGLPPVFVLDSRDGVFHTVPIYEGYALPHAIL 597
QIMFETFN PAMYVAIQAVLSLYA G VLDS DGV HTVPIYEGYALPHAIL
Sbjct: 123 QIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAIL 178
Score = 107 bits (256), Expect = 7e-24
Identities = 48/57 (84%), Positives = 52/57 (91%)
Frame = +2
Query: 77 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 247
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQ
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQ 61
>At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493
Actin 3 {Arabidopsis thaliana}; supported by full-length
cDNA: Ceres: 19581.
Length = 377
Score = 223 bits (546), Expect = 5e-59
Identities = 103/116 (88%), Positives = 106/116 (91%)
Frame = +1
Query: 250 QKGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 429
++GILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANREKMT
Sbjct: 63 KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMT 122
Query: 430 QIMFETFNTPAMYVAIQAVLSLYAFGLPPVFVLDSRDGVFHTVPIYEGYALPHAIL 597
QIMFETFN PAMYVAIQAVLSLYA G VLDS DGV HTVPIYEGYALPHAIL
Sbjct: 123 QIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAIL 178
Score = 107 bits (256), Expect = 7e-24
Identities = 48/57 (84%), Positives = 52/57 (91%)
Frame = +2
Query: 77 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 247
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQ
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQ 61
>At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671
Actin 1 (Actin 3) {Arabidopsis thaliana}
Length = 377
Score = 223 bits (546), Expect = 5e-59
Identities = 103/116 (88%), Positives = 106/116 (91%)
Frame = +1
Query: 250 QKGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 429
++GILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANREKMT
Sbjct: 63 KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMT 122
Query: 430 QIMFETFNTPAMYVAIQAVLSLYAFGLPPVFVLDSRDGVFHTVPIYEGYALPHAIL 597
QIMFETFN PAMYVAIQAVLSLYA G VLDS DGV HTVPIYEGYALPHAIL
Sbjct: 123 QIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAIL 178
Score = 107 bits (256), Expect = 7e-24
Identities = 48/57 (84%), Positives = 52/57 (91%)
Frame = +2
Query: 77 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 247
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQ
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQ 61
>At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 377
Score = 221 bits (540), Expect = 3e-58
Identities = 100/116 (86%), Positives = 108/116 (93%)
Frame = +1
Query: 250 QKGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 429
++GILTLKYPIEHG+V+NWDDMEKIWHHTFYNELR+APEEHPVLLTEAPLNPKANREKMT
Sbjct: 63 KRGILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREKMT 122
Query: 430 QIMFETFNTPAMYVAIQAVLSLYAFGLPPVFVLDSRDGVFHTVPIYEGYALPHAIL 597
QIMFETFN+PAMYVAIQAVLSLYA G VLDS DGV HTVPIYEG++LPHAIL
Sbjct: 123 QIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGFSLPHAIL 178
Score = 102 bits (245), Expect = 2e-22
Identities = 44/57 (77%), Positives = 51/57 (89%)
Frame = +2
Query: 77 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 247
+++ +V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH GVMVGM QKD+YVGDEAQ
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQ 61
>At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 371
Score = 221 bits (540), Expect = 3e-58
Identities = 100/116 (86%), Positives = 108/116 (93%)
Frame = +1
Query: 250 QKGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 429
++GILTLKYPIEHG+V+NWDDMEKIWHHTFYNELR+APEEHPVLLTEAPLNPKANREKMT
Sbjct: 63 KRGILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREKMT 122
Query: 430 QIMFETFNTPAMYVAIQAVLSLYAFGLPPVFVLDSRDGVFHTVPIYEGYALPHAIL 597
QIMFETFN+PAMYVAIQAVLSLYA G VLDS DGV HTVPIYEG++LPHAIL
Sbjct: 123 QIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGFSLPHAIL 178
Score = 102 bits (245), Expect = 2e-22
Identities = 44/57 (77%), Positives = 51/57 (89%)
Frame = +2
Query: 77 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 247
+++ +V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH GVMVGM QKD+YVGDEAQ
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQ 61
>At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293
Actin 8 {Arabidopsis thaliana}; nearly identical to
SP|Q96292 Actin 2 [Arabidopsis thaliana] GI:1669387, and
to At3g18780
Length = 377
Score = 221 bits (540), Expect = 3e-58
Identities = 100/116 (86%), Positives = 108/116 (93%)
Frame = +1
Query: 250 QKGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 429
++GILTLKYPIEHG+V+NWDDMEKIWHHTFYNELR+APEEHPVLLTEAPLNPKANREKMT
Sbjct: 63 KRGILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREKMT 122
Query: 430 QIMFETFNTPAMYVAIQAVLSLYAFGLPPVFVLDSRDGVFHTVPIYEGYALPHAIL 597
QIMFETFN+PAMYVAIQAVLSLYA G VLDS DGV HTVPIYEG++LPHAIL
Sbjct: 123 QIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGFSLPHAIL 178
Score = 102 bits (245), Expect = 2e-22
Identities = 44/57 (77%), Positives = 51/57 (89%)
Frame = +2
Query: 77 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 247
+++ +V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH GVMVGM QKD+YVGDEAQ
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQ 61
>At2g42100.1 68415.m05205 actin, putative very strong similarity to
SP|P53496 Actin 11 {Arabidopsis thaliana}, SP|P53493
Actin 3 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 378
Score = 207 bits (505), Expect = 5e-54
Identities = 92/116 (79%), Positives = 103/116 (88%)
Frame = +1
Query: 250 QKGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 429
++GIL+LKYPIEHG+V+NWDDMEKIWHHTFYNELR+ PEEHP+LLTEAPLNPK NREKMT
Sbjct: 64 RRGILSLKYPIEHGVVSNWDDMEKIWHHTFYNELRLEPEEHPILLTEAPLNPKVNREKMT 123
Query: 430 QIMFETFNTPAMYVAIQAVLSLYAFGLPPVFVLDSRDGVFHTVPIYEGYALPHAIL 597
QIMFE+F P+MY+ IQAVLSLY+ G VLDS DGV HTVPIYEGYALPHAIL
Sbjct: 124 QIMFESFAFPSMYIGIQAVLSLYSSGRTTGIVLDSGDGVSHTVPIYEGYALPHAIL 179
Score = 101 bits (242), Expect = 4e-22
Identities = 44/57 (77%), Positives = 52/57 (91%)
Frame = +2
Query: 77 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 247
+E A+V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH+GVMVGM +KD++VGDEAQ
Sbjct: 6 DESVAIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHRGVMVGMDEKDTFVGDEAQ 62
>At2g42170.1 68415.m05219 actin, putative similar to actin 2
[Arabidopsis thaliana] gi|9293903|dbj|BAB01806
Length = 329
Score = 192 bits (469), Expect = 1e-49
Identities = 88/116 (75%), Positives = 100/116 (86%)
Frame = +1
Query: 250 QKGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 429
+ GILTL YP+EHG+V+NWDDMEKIW+HTFY+ELRVAPEEHPVLLTEAPLNPKA+REKMT
Sbjct: 18 RSGILTLDYPMEHGVVSNWDDMEKIWYHTFYSELRVAPEEHPVLLTEAPLNPKADREKMT 77
Query: 430 QIMFETFNTPAMYVAIQAVLSLYAFGLPPVFVLDSRDGVFHTVPIYEGYALPHAIL 597
QIMFETF P+MY+ +QA LSL+A G VLDS DGV + VPIYEG ALPHAIL
Sbjct: 78 QIMFETFAVPSMYIGMQAALSLHASGRTTGTVLDSGDGVSYIVPIYEGSALPHAIL 133
>At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Actin
11 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 366
Score = 190 bits (463), Expect = 6e-49
Identities = 91/134 (67%), Positives = 103/134 (76%)
Frame = +1
Query: 196 RDGRYGTEGLLCRR*GTEQKGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 375
RDG E + G + ILTLK P+EHGIV NWDDMEKIWH+TFYNELRV PEEHP
Sbjct: 35 RDGLNPNESYVGEE-GHANRDILTLKDPMEHGIVNNWDDMEKIWHYTFYNELRVDPEEHP 93
Query: 376 VLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYAFGLPPVFVLDSRDGVFHT 555
VLLTEAP NPKANREKMTQIMFE+F+ PAMYV++Q+VL LY+ G VLD + V HT
Sbjct: 94 VLLTEAPYNPKANREKMTQIMFESFDVPAMYVSMQSVLYLYSSGRTTGVVLDLGERVSHT 153
Query: 556 VPIYEGYALPHAIL 597
VP+YEGYALPH IL
Sbjct: 154 VPVYEGYALPHGIL 167
Score = 59.3 bits (137), Expect = 2e-09
Identities = 27/50 (54%), Positives = 35/50 (70%)
Frame = +2
Query: 92 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE 241
+V D G GM +AGFAGD+AP+ VFP +VGRPR G+ +SYVG+E
Sbjct: 4 IVCDKGHGMVQAGFAGDEAPKVVFPCVVGRPRD-----GLNPNESYVGEE 48
>At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly
identical to actin-related protein 2 (ARP2) [Arabidopsis
thaliana] GI:3818624; contains Pfam profile PF00022:
Actin
Length = 389
Score = 141 bits (342), Expect = 3e-34
Identities = 60/115 (52%), Positives = 81/115 (70%)
Frame = +1
Query: 244 TEQKGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 423
+E + L + YP+ +GIV NWDDME +W H FYNEL++ P + +LLT+ PLNP NREK
Sbjct: 60 SELRHQLDINYPVHNGIVQNWDDMEHVWDHAFYNELKINPSDCKILLTDPPLNPSKNREK 119
Query: 424 MTQIMFETFNTPAMYVAIQAVLSLYAFGLPPVFVLDSRDGVFHTVPIYEGYALPH 588
M + MFE +N +++ IQAVL+LYA GL V+DS DGV H VP+ +GY+ PH
Sbjct: 120 MIETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPH 174
Score = 49.2 bits (112), Expect = 2e-06
Identities = 23/51 (45%), Positives = 34/51 (66%), Gaps = 2/51 (3%)
Frame = +2
Query: 92 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGD 238
+V DNG+G K GFAG++ P +VFP +VGRP R++ ++ KD VG+
Sbjct: 7 VVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLMEQQVKDIVVGE 57
>At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identical
to actin-related protein 3 (ARP3) [Arabidopsis thaliana]
GI:21427461; contains Pfam profile PF00022: Actin
Length = 427
Score = 106 bits (254), Expect = 1e-23
Identities = 52/114 (45%), Positives = 68/114 (59%), Gaps = 5/114 (4%)
Frame = +1
Query: 268 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 447
L YPIEHG V +WD ME+ W +N LR PE+H LLTE+PL P +RE +I+FET
Sbjct: 86 LHYPIEHGQVEDWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTPPESREYTGEILFET 145
Query: 448 FNTPAMYVAIQAVLSLYAFGLPPV-----FVLDSRDGVFHTVPIYEGYALPHAI 594
FN P +Y+A+ +VL+L A V+D DG H VP+ EGY + I
Sbjct: 146 FNVPGLYIAVNSVLALAAGYTTSKCEMTGVVVDVGDGATHVVPVAEGYVIGSCI 199
Score = 35.9 bits (79), Expect = 0.021
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = +2
Query: 89 ALVVDNGSGMCKAGFAGDDAPRAVFPSIV 175
A+V+DNG+G K GFAG+ P + P++V
Sbjct: 8 AIVIDNGTGYTKMGFAGNVEPCFILPTVV 36
>At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary
identical to actin-related protein 4 (ARP4) [Arabidopsis
thaliana] GI:21427463; contains Pfam profile PF00022:
Actin; supporting cDNA gi|21427462|gb|AF507912.1|
Length = 441
Score = 97.9 bits (233), Expect = 5e-21
Identities = 43/108 (39%), Positives = 67/108 (62%)
Frame = +1
Query: 277 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 456
PI+ GIV++WD ++ IW H F + L + P EHP+LL E PLN + REK ++MFE +
Sbjct: 94 PIKDGIVSDWDLVDNIWEHAFKSCLMIDPTEHPMLLAEPPLNTQQQREKAAELMFEKYKV 153
Query: 457 PAMYVAIQAVLSLYAFGLPPVFVLDSRDGVFHTVPIYEGYALPHAILA 600
PA+++A VL+ +A G V+D G P+++GY L A+++
Sbjct: 154 PALFMAKNPVLTSFATGRATSLVVDCGGGSTTISPVHDGYVLQKAVVS 201
Score = 56.8 bits (131), Expect = 1e-08
Identities = 23/34 (67%), Positives = 31/34 (91%)
Frame = +2
Query: 77 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 178
+EV+A+VVD GS CKAG+AG+DAP+AVFPS++G
Sbjct: 5 DEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVIG 38
>At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identical
to actin-related protein 7 (ARP7) [Arabidopsis thaliana]
GI:21427469; contains Pfam profile PF00022: Actin
Length = 363
Score = 75.8 bits (178), Expect = 2e-14
Identities = 42/105 (40%), Positives = 56/105 (53%), Gaps = 1/105 (0%)
Frame = +1
Query: 277 PIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFN 453
PIE G++ +WD ME + + Y L E +L T+ PKA RE++ Q+MFETFN
Sbjct: 57 PIERGLIRDWDAMEDLLRYVVYTGLGWEEGNEGNILFTDPLCTPKAIREQLVQLMFETFN 116
Query: 454 TPAMYVAIQAVLSLYAFGLPPVFVLDSRDGVFHTVPIYEGYALPH 588
Y + QAVLSLYA G +D G P+ EG A+ H
Sbjct: 117 VSGFYASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVLEG-AVQH 160
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +2
Query: 89 ALVVDNGSGMCKAGFA-GDDAPRAVFPSIVGR 181
ALVVD GS KAG A D +P + PS + R
Sbjct: 3 ALVVDAGSKFLKAGAAIPDQSPAMIIPSQMKR 34
>At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly
identical to actin-related protein 6 (ARP6) [Arabidopsis
thaliana] GI:21427467; contains Pfam profile PF00022:
Actin
Length = 421
Score = 62.9 bits (146), Expect = 2e-10
Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Frame = +1
Query: 268 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 447
++ PI+ G + N D +IW H F + L +AP +LLTEAPL+ + + +++FE
Sbjct: 61 VRRPIDRGYLINSDLQREIWSHLFTSLLHIAPSSSSLLLTEAPLSIPSVQRTTDELVFED 120
Query: 448 FNTPAMYVA-IQAVLSLYAFGLPP---------VFVLDSRDGVFHTVPIYEGYALPHAI 594
F ++Y+A Q+++ LY P V+D H VP+ + L HAI
Sbjct: 121 FGFSSLYIAHPQSLVHLYEASRQPDSILSKTQCSLVVDCGFSFTHAVPVLHNFTLNHAI 179
Score = 32.7 bits (71), Expect = 0.19
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 92 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 184
+V+DNG G+ KAG G+ P V P+ + +P
Sbjct: 5 VVLDNGGGLIKAGQGGERDPTTVIPNCLYKP 35
>At1g73910.1 68414.m08559 actin-related protein 5 (ARP5) identical
to actin-related protein 5 (ARP5) GI:21489922 from
[Arabidopsis thaliana]
Length = 145
Score = 62.5 bits (145), Expect = 2e-10
Identities = 32/71 (45%), Positives = 44/71 (61%)
Frame = +1
Query: 211 GTEGLLCRR*GTEQKGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 390
G++ L RR +Q IL+ P + GIVT+WD ++ +W H F N L + P EHP+LL E
Sbjct: 72 GSQALNFRR---DQMEILS---PTKDGIVTDWDMVDNVWDHAFRNCLMIDPTEHPMLLAE 125
Query: 391 APLNPKANREK 423
PLN + REK
Sbjct: 126 PPLNSQQQREK 136
Score = 57.2 bits (132), Expect = 8e-09
Identities = 24/34 (70%), Positives = 31/34 (91%)
Frame = +2
Query: 77 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 178
+EV+A+VVD GS CKAG+AG+DAP+AVFPS+VG
Sbjct: 5 DEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVVG 38
>At3g12380.1 68416.m01543 actin/actin-like family protein similar to
SP|P53946 Actin-like protein ARP5 {Saccharomyces
cerevisiae}; contains Pfam profile PF00022: Actin
Length = 724
Score = 48.8 bits (111), Expect = 3e-06
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Frame = +1
Query: 277 PIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN 453
P + +V ++ ME I + F + +HP+L+TE NP +R KM +++FET+
Sbjct: 85 PFDSNVVYQFEIMEYILDYAFDRLGANGSGIDHPILITECACNPVQSRSKMAELLFETYG 144
Query: 454 TPAMYVAIQAVLS 492
PA+ + A S
Sbjct: 145 VPAVAFGVDAAFS 157
Score = 44.0 bits (99), Expect = 8e-05
Identities = 21/49 (42%), Positives = 31/49 (63%)
Frame = +2
Query: 92 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGD 238
+V+DNG+ + G+AG+ PR VF +IV RPRH+ G+ + VGD
Sbjct: 22 IVIDNGASYFRIGWAGETEPRVVFRNIVQRPRHKAT----GETVTIVGD 66
>At5g01040.1 68418.m00007 laccase family protein / diphenol oxidase
family protein similar to laccase [Pinus
taeda][GI:13661201], lac110 laccase, Populus
trichocarpa, EMBL:PTY13773
Length = 584
Score = 33.9 bits (74), Expect = 0.083
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = -1
Query: 213 PIPTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSS 76
P P I P RGL +G T+ +SSPA+P + +P +ST + TS+
Sbjct: 290 PTPDIKP-TRGLIVYQGATS--SSSPAEPLMPVPNDMSTAHRFTSN 332
>At5g56180.2 68418.m07009 actin-related protein, putative (ARP8)
strong similarity to actin-related protein 8A (ARP8)
[Arabidopsis thaliana] GI:21427473; contains Pfam
profile PF00022: Actin; supporting cDNA
gi|21427470|gb|AF507916.1|
Length = 387
Score = 30.3 bits (65), Expect = 1.0
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Frame = +1
Query: 334 TFYNELRVAPEEHPVLLTEAPL-------NPKANREKMTQIMFETF---NTPAMYVAIQA 483
T + ++V P P++++ PL + KA+R ++ +F N PA+ QA
Sbjct: 182 TIFTRMQVKPSMQPIVVS-LPLCHFDDTESAKASRRQLKTAIFNVLFDMNVPAVCAVNQA 240
Query: 484 VLSLYAFGLPPVFVLDSRDGVFHTVPIYEG 573
VL+LYA V++ V +PI G
Sbjct: 241 VLALYAARRTSGIVVNIGFQVITILPILHG 270
>At5g56180.1 68418.m07008 actin-related protein, putative (ARP8)
strong similarity to actin-related protein 8A (ARP8)
[Arabidopsis thaliana] GI:21427473; contains Pfam
profile PF00022: Actin; supporting cDNA
gi|21427470|gb|AF507916.1|
Length = 471
Score = 30.3 bits (65), Expect = 1.0
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Frame = +1
Query: 334 TFYNELRVAPEEHPVLLTEAPL-------NPKANREKMTQIMFETF---NTPAMYVAIQA 483
T + ++V P P++++ PL + KA+R ++ +F N PA+ QA
Sbjct: 182 TIFTRMQVKPSMQPIVVS-LPLCHFDDTESAKASRRQLKTAIFNVLFDMNVPAVCAVNQA 240
Query: 484 VLSLYAFGLPPVFVLDSRDGVFHTVPIYEG 573
VL+LYA V++ V +PI G
Sbjct: 241 VLALYAARRTSGIVVNIGFQVITILPILHG 270
>At3g07870.1 68416.m00962 F-box family protein contains F-box domain
Pfam:PF00646
Length = 417
Score = 26.2 bits (55), Expect(2) = 1.7
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = -1
Query: 189 WRGLPTIEGNTARGASSPAKPA--LHIPEPL 103
WR + T G + +SSP KP LH P+
Sbjct: 55 WRSVLTQHGRLSSSSSSPTKPCLLLHCDSPI 85
Score = 21.8 bits (44), Expect(2) = 1.7
Identities = 8/27 (29%), Positives = 17/27 (62%)
Frame = -1
Query: 378 DGVFLGGDTQLIVEGMMPNLLHVIPVS 298
DGV +GG + + E ++ ++ +P+S
Sbjct: 17 DGVGVGGGLESLPEDIIADIFSRLPIS 43
>At3g05690.1 68416.m00636 CCAAT-binding transcription factor
(CBF-B/NF-YA) family protein contains Pfam profile:
PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA)
subunit B
Length = 295
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/65 (29%), Positives = 29/65 (44%)
Frame = +3
Query: 402 PQGQQREDDPDHVRNIQHARHVRRHPSRALAVRVRSTTGIRAGLPRRCLPHRAHLRGIRT 581
P + ED +V + Q+ +RR SRA A V + + + + H HL +R
Sbjct: 128 PLNMETEDSTIYVNSKQYHGIIRRRQSRAKAAAVLDQKKLSSRCRKPYMHHSRHLHALR- 186
Query: 582 SPRHS 596
PR S
Sbjct: 187 RPRGS 191
>At1g16690.2 68414.m01999 transcription factor-related similar to
enhancer of polycomb (GI:11907923)[Homo sapiens]
Length = 439
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +1
Query: 262 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 423
L++KY + H I + W + +IW L+ P PV T P N REK
Sbjct: 178 LSIKYGVFHAIYSYWKNKREIWQKPILRRLQPPP---PVNDTN-PYNVFRPREK 227
>At1g16690.1 68414.m01998 transcription factor-related similar to
enhancer of polycomb (GI:11907923)[Homo sapiens]
Length = 439
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +1
Query: 262 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 423
L++KY + H I + W + +IW L+ P PV T P N REK
Sbjct: 178 LSIKYGVFHAIYSYWKNKREIWQKPILRRLQPPP---PVNDTN-PYNVFRPREK 227
>At5g17420.1 68418.m02044 cellulose synthase, catalytic subunit
(IRX3) identical to gi:5230423
Length = 1026
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = +3
Query: 390 GSPQPQGQQREDDPDHVR---NIQHARHVRRHPSRAL 491
GSP+ +G + E+D D + NI+H + +H + A+
Sbjct: 91 GSPRVEGDEDEEDIDDIEYEFNIEHEQDKHKHSAEAM 127
>At3g63400.2 68416.m07138 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to cyclophylin
[Digitalis lanata] GI:1563719; contains Pfam profile
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type; contains AT-donor splice site at
intron 9
Length = 387
Score = 27.9 bits (59), Expect = 5.5
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = +3
Query: 471 RHPSRALAVRVRSTTGIRAGLPRRCLPHRAHLRGIRTSPRHS 596
RH SR+ + R R I L R P R+ +RG RTSP S
Sbjct: 328 RHRSRSQSPRKRQP--ISQDLKSRLGPQRSPIRGGRTSPAES 367
>At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to cyclophylin
[Digitalis lanata] GI:1563719; contains Pfam profile
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type; contains AT-donor splice site at
intron 9
Length = 570
Score = 27.9 bits (59), Expect = 5.5
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = +3
Query: 471 RHPSRALAVRVRSTTGIRAGLPRRCLPHRAHLRGIRTSPRHS 596
RH SR+ + R R I L R P R+ +RG RTSP S
Sbjct: 511 RHRSRSQSPRKRQP--ISQDLKSRLGPQRSPIRGGRTSPAES 550
>At5g06610.1 68418.m00747 expressed protein contains Pfam profile
PF04788: Protein of unknown function (DUF620)
Length = 368
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -1
Query: 189 WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSSHI 67
WR P + + A+GA P + AL +PL+ ++ +S+ +
Sbjct: 167 WRYTPWLGDHAAKGAIRPLRRALQGLDPLTISSVFSSAQFV 207
>At2g38330.1 68415.m04709 MATE efflux family protein low similarity
to enhanced disease susceptibility 5 [Arabidopsis
thaliana] GI:16589070; contains Pfam profile PF01554:
Uncharacterized membrane protein family
Length = 521
Score = 27.1 bits (57), Expect = 9.6
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = +1
Query: 424 MTQIMFETFNTPAMYVAIQAVLSLYAFGLPPVFVLDSRDGVFH-----TVPIY 567
+ +M F++P M + + L L A+G PP+ V + G F T P+Y
Sbjct: 192 LMDVMAIPFDSP-MRIPAEQFLRLRAYGAPPIVVALAAQGAFRGFKDTTTPLY 243
>At2g31900.1 68415.m03897 myosin family protein contains Pfam
profiles: PF00063 myosin head (motor domain), PF01843
DIL domain, PF00612 IQ calmodulin-binding motif, PF02736
myosin N-terminal SH3-like domain
Length = 1556
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +1
Query: 301 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 450
NW +E + + + + P LL EA + PK+ E Q M++T+
Sbjct: 480 NWSYVEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKMYQTY 529
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,743,310
Number of Sequences: 28952
Number of extensions: 347729
Number of successful extensions: 1117
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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