Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0307
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   2.0  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    27   3.4  
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S...    25   7.8  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    25   7.8  

>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 23.4 bits (48), Expect(2) = 2.0
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = -3

Query: 373 SIYIYIFFFY 344
           SIYIYI+FF+
Sbjct: 78  SIYIYIYFFF 87



 Score = 22.6 bits (46), Expect(2) = 2.0
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 370 IYIYIFFFYCLC 335
           IYIY FF+  LC
Sbjct: 81  IYIYFFFYSFLC 92


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +3

Query: 69  HRSRV-HPYYLEPLRSSTVRFRDLFCHVPSGYGMSSPPRCFPSAMTCPSSNEA 224
           H +R+ HP +  P  S T  +    C  P+ Y  S+PP+  P+    PSS  +
Sbjct: 195 HPNRLPHPIHNHPYSSPT-SYPPPLC--PATYCPSNPPQLAPATAIAPSSQSS 244


>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
           Atm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 693

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 185 FPERYDMSFFKRGLWRVLSGRQRLALPLALLKS 283
           FPE Y     +RGL      +QRLA+   LLK+
Sbjct: 565 FPEGYQTKVGERGLMISGGEKQRLAVSRLLLKN 597


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = -1

Query: 237 NTLHKPRLKKDMS*RSGNTVEGSSFHSRMVRGKKDL*NALWMTAVA 100
           NTL  P L  + S    +TV  + FH+  + G     +  W +  A
Sbjct: 755 NTLRSPSLNSNNSSAHASTVSRNPFHNLKISGASSPVSNFWESEFA 800


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,869,363
Number of Sequences: 5004
Number of extensions: 57663
Number of successful extensions: 135
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)