Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0307
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0570 + 30070338-30071606                                         29   4.7  
02_05_0154 - 26330109-26330189,26330274-26330411,26330518-263306...    29   4.7  
10_01_0144 - 1705429-1706250                                           28   6.2  

>02_05_0570 + 30070338-30071606
          Length = 422

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 332 AGGHTAHLMVSGYRRPWTSAMPGAEPAAAYR 240
           AG   A   VSG+RRP+ +   G +P + +R
Sbjct: 340 AGAGLAESGVSGWRRPFVTHFTGCQPCSGHR 370


>02_05_0154 -
           26330109-26330189,26330274-26330411,26330518-26330633,
           26330782-26330863,26332706-26332770,26333016-26333112,
           26334066-26334136,26334242-26334304,26334379-26334431,
           26335143-26335192,26336295-26336340,26337014-26337019,
           26337381-26337511,26337594-26337680,26338472-26338849
          Length = 487

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +1

Query: 517 RIVNNSLYFITNKKNHKCMYFI*HFASDILVGNNYLSNKRTWKSTGGM 660
           ++VNNS + +  K ++KC+ ++     +  VG   LSNK  W   G +
Sbjct: 283 KVVNNSEHHVAFKVSYKCIVYV-----ECHVGGQLLSNK-VWTDYGSL 324


>10_01_0144 - 1705429-1706250
          Length = 273

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -2

Query: 89  WMNSTPVAGGAMVKTRCWYHLEQFLRALP 3
           W+ +TP+A        CWY L   L  +P
Sbjct: 241 WLRTTPLALAPPSSAPCWYFLTTLLEIIP 269


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,820,392
Number of Sequences: 37544
Number of extensions: 422964
Number of successful extensions: 995
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)