Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0307
(696 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1) 36 0.024
SB_14726| Best HMM Match : Ribosomal_L30 (HMM E-Value=6.6) 36 0.041
SB_48112| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.041
SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.072
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 34 0.13
SB_37654| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.29
SB_49429| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.39
SB_31373| Best HMM Match : Put_DNA-bind_N (HMM E-Value=8.4) 32 0.39
SB_18046| Best HMM Match : RVT_1 (HMM E-Value=0.34) 32 0.39
SB_4935| Best HMM Match : Pox_F16 (HMM E-Value=5.3) 32 0.51
SB_54752| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.51
SB_51257| Best HMM Match : Pox_F16 (HMM E-Value=4.1) 32 0.51
SB_33578| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076) 32 0.51
SB_33076| Best HMM Match : Put_DNA-bind_N (HMM E-Value=8.4) 32 0.51
SB_20783| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.51
SB_16492| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.51
SB_43828| Best HMM Match : XPG_N (HMM E-Value=1.8) 31 0.67
SB_26135| Best HMM Match : RVT_1 (HMM E-Value=0.072) 31 0.67
SB_19117| Best HMM Match : XPG_N (HMM E-Value=1.8) 31 0.67
SB_51961| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.67
SB_43541| Best HMM Match : RVT_1 (HMM E-Value=0) 31 0.67
SB_40765| Best HMM Match : DX (HMM E-Value=1.4) 31 0.67
SB_38808| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.67
SB_30407| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.67
SB_20120| Best HMM Match : RVT_1 (HMM E-Value=0) 31 0.67
SB_17278| Best HMM Match : RVT_1 (HMM E-Value=0.0082) 31 0.67
SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27) 31 0.67
SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39) 31 0.67
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 31 0.89
SB_31120| Best HMM Match : Pox_F16 (HMM E-Value=5) 31 1.2
SB_58989| Best HMM Match : RVT_1 (HMM E-Value=0) 30 1.6
SB_22775| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_16065| Best HMM Match : zf-C3HC4 (HMM E-Value=0.91) 30 2.1
SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_24816| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_19530| Best HMM Match : EMI (HMM E-Value=3.5) 29 2.7
SB_25119| Best HMM Match : Ribosomal_S27 (HMM E-Value=9.4) 29 2.7
SB_58576| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_56220| Best HMM Match : RVT_1 (HMM E-Value=3.7e-16) 29 3.6
SB_48902| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_40983| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_40552| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_38731| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_34180| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_34116| Best HMM Match : RVT_1 (HMM E-Value=0) 29 3.6
SB_33307| Best HMM Match : NAF1 (HMM E-Value=1.5e-18) 29 3.6
SB_33284| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_32643| Best HMM Match : Carla_C4 (HMM E-Value=9.9) 29 3.6
SB_30890| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_29924| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40) 29 3.6
SB_24244| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_22251| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_36764| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_36762| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_29800| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_26110| Best HMM Match : HipA_C (HMM E-Value=5.5) 29 3.6
SB_25497| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_24298| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_19305| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_14729| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_14496| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28) 29 3.6
SB_2897| Best HMM Match : RVT_1 (HMM E-Value=3e-33) 29 4.8
SB_1926| Best HMM Match : PH (HMM E-Value=1.4e-23) 29 4.8
SB_11782| Best HMM Match : P53_tetramer (HMM E-Value=3.3e-11) 29 4.8
SB_30049| Best HMM Match : FBA_2 (HMM E-Value=7) 28 6.3
SB_22937| Best HMM Match : HD (HMM E-Value=1e-11) 28 6.3
SB_40344| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_8004| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_55061| Best HMM Match : Defensin_beta (HMM E-Value=6.9) 28 8.3
>SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)
Length = 2075
Score = 36.3 bits (80), Expect = 0.024
Identities = 20/48 (41%), Positives = 25/48 (52%)
Frame = +2
Query: 122 AFQRSFLPRTIRLWNELPSTVFPERYDMSFFKRGLWRVLSGRQRLALP 265
AF SF PRTIR WN LP+ V D+ FK L +S + +P
Sbjct: 1643 AFNYSFFPRTIRTWNLLPAEVV-NAADLPSFKSALAPAISELKWFTIP 1689
>SB_14726| Best HMM Match : Ribosomal_L30 (HMM E-Value=6.6)
Length = 231
Score = 35.5 bits (78), Expect = 0.041
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +2
Query: 125 FQRSFLPRTIRLWNELPSTVFPERYDMSFFKRGL 226
++ SFLPR +RLWN LP +V R F GL
Sbjct: 198 YKYSFLPRALRLWNNLPQSVIDMRGCPEAFHSGL 231
>SB_48112| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 232
Score = 35.5 bits (78), Expect = 0.041
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +2
Query: 125 FQRSFLPRTIRLWNELPSTVFPERYDMSFFKRGL 226
++ SFLPR +RLWN LP +V R F GL
Sbjct: 199 YKYSFLPRALRLWNNLPQSVIDMRGCPEAFHAGL 232
>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3142
Score = 34.7 bits (76), Expect = 0.072
Identities = 18/35 (51%), Positives = 20/35 (57%)
Frame = +2
Query: 122 AFQRSFLPRTIRLWNELPSTVFPERYDMSFFKRGL 226
AF SF PRTIR WN LP+ V D+ FK L
Sbjct: 1089 AFNYSFFPRTIRTWNLLPAEVV-NAADLPSFKSAL 1122
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 33.9 bits (74), Expect = 0.13
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +3
Query: 141 CHVPSGYGMSSPPRCFPSAMTCPSSNEACGEY*AVGSGWLC 263
C P GY + +P RC S +C SS AC V ++C
Sbjct: 2147 CSCPQGYRLENPYRCVLSNASCASSEFACESGQCVRKSFVC 2187
>SB_37654| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 865
Score = 32.7 bits (71), Expect = 0.29
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +2
Query: 119 SAFQRSFLPRTIRLWNELPSTVFP 190
+AF SF RTI +WN LP VFP
Sbjct: 824 NAFLFSFYSRTIPVWNALPQAVFP 847
>SB_49429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 918
Score = 32.3 bits (70), Expect = 0.39
Identities = 18/35 (51%), Positives = 19/35 (54%)
Frame = +2
Query: 134 SFLPRTIRLWNELPSTVFPERYDMSFFKRGLWRVL 238
SF PRTIR WN LPS V E + FK VL
Sbjct: 873 SFFPRTIRTWNLLPSEVI-ESSSIDSFKSSALPVL 906
>SB_31373| Best HMM Match : Put_DNA-bind_N (HMM E-Value=8.4)
Length = 198
Score = 32.3 bits (70), Expect = 0.39
Identities = 18/35 (51%), Positives = 19/35 (54%)
Frame = +2
Query: 134 SFLPRTIRLWNELPSTVFPERYDMSFFKRGLWRVL 238
SF PRTIR WN LPS V E + FK VL
Sbjct: 153 SFFPRTIRTWNLLPSEVI-ESSSIDSFKSSALPVL 186
>SB_18046| Best HMM Match : RVT_1 (HMM E-Value=0.34)
Length = 837
Score = 32.3 bits (70), Expect = 0.39
Identities = 18/35 (51%), Positives = 19/35 (54%)
Frame = +2
Query: 134 SFLPRTIRLWNELPSTVFPERYDMSFFKRGLWRVL 238
SF PRTIR WN LPS V E + FK VL
Sbjct: 792 SFFPRTIRTWNLLPSEVI-ESSSIDSFKSSALPVL 825
>SB_4935| Best HMM Match : Pox_F16 (HMM E-Value=5.3)
Length = 243
Score = 31.9 bits (69), Expect = 0.51
Identities = 18/35 (51%), Positives = 19/35 (54%)
Frame = +2
Query: 134 SFLPRTIRLWNELPSTVFPERYDMSFFKRGLWRVL 238
SF PRTIR WN LPS V E + FK VL
Sbjct: 198 SFFPRTIRTWNLLPSEVV-ESSSIDSFKSSALPVL 231
>SB_54752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 792
Score = 31.9 bits (69), Expect = 0.51
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +2
Query: 125 FQRSFLPRTIRLWNELPS 178
++ S+ PRT++LWN LPS
Sbjct: 746 YRNSYFPRTVKLWNSLPS 763
>SB_51257| Best HMM Match : Pox_F16 (HMM E-Value=4.1)
Length = 243
Score = 31.9 bits (69), Expect = 0.51
Identities = 18/35 (51%), Positives = 19/35 (54%)
Frame = +2
Query: 134 SFLPRTIRLWNELPSTVFPERYDMSFFKRGLWRVL 238
SF PRTIR WN LPS V E + FK VL
Sbjct: 198 SFFPRTIRTWNLLPSEVV-ESSSIDSFKSSALPVL 231
>SB_33578| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076)
Length = 888
Score = 31.9 bits (69), Expect = 0.51
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +2
Query: 125 FQRSFLPRTIRLWNELPSTVFPERY 199
F+ SF+PR IRLWN L TV Y
Sbjct: 744 FKYSFVPRAIRLWNSLEVTVVLAAY 768
>SB_33076| Best HMM Match : Put_DNA-bind_N (HMM E-Value=8.4)
Length = 152
Score = 31.9 bits (69), Expect = 0.51
Identities = 18/35 (51%), Positives = 19/35 (54%)
Frame = +2
Query: 134 SFLPRTIRLWNELPSTVFPERYDMSFFKRGLWRVL 238
SF PRTIR WN LPS V E + FK VL
Sbjct: 107 SFFPRTIRTWNLLPSEVV-ESSSIDSFKSSALPVL 140
>SB_20783| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 295
Score = 31.9 bits (69), Expect = 0.51
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +2
Query: 125 FQRSFLPRTIRLWNELPS 178
++ S+ PRT++LWN LPS
Sbjct: 249 YRNSYFPRTVKLWNSLPS 266
>SB_16492| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 295
Score = 31.9 bits (69), Expect = 0.51
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +2
Query: 125 FQRSFLPRTIRLWNELPS 178
++ S+ PRT++LWN LPS
Sbjct: 249 YRNSYFPRTVKLWNSLPS 266
>SB_43828| Best HMM Match : XPG_N (HMM E-Value=1.8)
Length = 174
Score = 31.5 bits (68), Expect = 0.67
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +2
Query: 134 SFLPRTIRLWNELPSTVFPERYDMSFFKRGL 226
SF PRTIR WN LP+ + E + FKR L
Sbjct: 136 SFFPRTIRHWNTLPNELV-ELGSIEHFKRDL 165
>SB_26135| Best HMM Match : RVT_1 (HMM E-Value=0.072)
Length = 375
Score = 31.5 bits (68), Expect = 0.67
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +2
Query: 134 SFLPRTIRLWNELPSTVFPERYDMSFFKRGL 226
SF PRTIR WN LP+ + E + FKR L
Sbjct: 337 SFFPRTIRHWNTLPNELV-ELGSIEHFKRDL 366
>SB_19117| Best HMM Match : XPG_N (HMM E-Value=1.8)
Length = 361
Score = 31.5 bits (68), Expect = 0.67
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +2
Query: 134 SFLPRTIRLWNELPSTVFPERYDMSFFKRGL 226
SF PRTIR WN LP+ + E + FKR L
Sbjct: 323 SFFPRTIRHWNTLPNELV-ELGSIEHFKRDL 352
>SB_51961| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 193
Score = 31.5 bits (68), Expect = 0.67
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 122 AFQRSFLPRTIRLWNELPSTV 184
++ SF PR IR+WN LPS V
Sbjct: 138 SYNYSFFPRAIRIWNLLPSNV 158
>SB_43541| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 581
Score = 31.5 bits (68), Expect = 0.67
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +2
Query: 134 SFLPRTIRLWNELPSTVFPERYDMSFFKRGL 226
SF PRTIR WN LP+ + E + FKR L
Sbjct: 543 SFFPRTIRHWNTLPNELV-ELGSIEHFKRDL 572
>SB_40765| Best HMM Match : DX (HMM E-Value=1.4)
Length = 278
Score = 31.5 bits (68), Expect = 0.67
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +2
Query: 134 SFLPRTIRLWNELPSTVFPERYDMSFFKRGL 226
SF PRTIR WN LP+ + E + FKR L
Sbjct: 240 SFFPRTIRHWNTLPNELV-ELDSIEHFKRDL 269
>SB_38808| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 824
Score = 31.5 bits (68), Expect = 0.67
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +2
Query: 134 SFLPRTIRLWNELPSTVFPERYDMSFFKRGL 226
SF PRTIR WN LP+ + E + FKR L
Sbjct: 786 SFFPRTIRHWNTLPNELV-ELGSIEHFKRDL 815
>SB_30407| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 788
Score = 31.5 bits (68), Expect = 0.67
Identities = 16/28 (57%), Positives = 17/28 (60%)
Frame = +2
Query: 134 SFLPRTIRLWNELPSTVFPERYDMSFFK 217
SF PRTIR WN LPS V E + FK
Sbjct: 564 SFFPRTIRTWNLLPSEVI-ESSSIDSFK 590
>SB_20120| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 666
Score = 31.5 bits (68), Expect = 0.67
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +2
Query: 134 SFLPRTIRLWNELPSTVFPERYDMSFFKRGL 226
SF PRTIR WN LP+ + E + FKR L
Sbjct: 628 SFFPRTIRHWNTLPNELV-ELGSIEHFKRDL 657
>SB_17278| Best HMM Match : RVT_1 (HMM E-Value=0.0082)
Length = 506
Score = 31.5 bits (68), Expect = 0.67
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 122 AFQRSFLPRTIRLWNELPSTV 184
++ SF PR IR+WN LPS V
Sbjct: 457 SYNYSFFPRAIRIWNLLPSNV 477
>SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27)
Length = 1492
Score = 31.5 bits (68), Expect = 0.67
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 122 AFQRSFLPRTIRLWNELPSTV 184
++ SF PR IR+WN LPS V
Sbjct: 1443 SYNYSFFPRAIRIWNLLPSNV 1463
>SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39)
Length = 452
Score = 31.5 bits (68), Expect = 0.67
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 122 AFQRSFLPRTIRLWNELPSTV 184
++ SF PR IR+WN LPS V
Sbjct: 403 SYNYSFFPRAIRIWNLLPSNV 423
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 31.1 bits (67), Expect = 0.89
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = +2
Query: 134 SFLPRTIRLWNELPSTV 184
SF PRTIR WN LPS V
Sbjct: 460 SFFPRTIRTWNLLPSEV 476
>SB_31120| Best HMM Match : Pox_F16 (HMM E-Value=5)
Length = 284
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/35 (48%), Positives = 19/35 (54%)
Frame = +2
Query: 134 SFLPRTIRLWNELPSTVFPERYDMSFFKRGLWRVL 238
SF PRTIR WN LP+ V E + FK VL
Sbjct: 239 SFFPRTIRTWNLLPAQVV-ESSSIDSFKSSALPVL 272
>SB_58989| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 885
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 134 SFLPRTIRLWNELPSTVFPERYDMSFFKRGLWRV 235
SF RTI WN LP+ +F E + FK + R+
Sbjct: 846 SFFSRTIIQWNNLPALLFNEPCSLPIFKDKISRL 879
>SB_22775| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 119 SAFQRSFLPRTIRLWN 166
+AF SF+PRTIR WN
Sbjct: 109 NAFDMSFIPRTIRTWN 124
>SB_16065| Best HMM Match : zf-C3HC4 (HMM E-Value=0.91)
Length = 399
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = +3
Query: 30 MIPASRFYHRTARHRSRVHPYYLEPLRSSTVRFRDLFCHVPSGYGMSSPPRCFPSAMTCP 209
++P R +R+ S ++ + S T R+ +P+ Y S RCFP + P
Sbjct: 201 LLPTFRVTSHFSRYTSHHALHHTSRVASHTTRYISHHALIPTSYVSSHITRCFPLLVLHP 260
Query: 210 SS 215
+S
Sbjct: 261 TS 262
>SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2992
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 43 LVFTIAPPATGVEFIHTTWSHCGHP-QCVSEIFFATYHPAME 165
+V+T+ PP +G +I + C P QC + + F H A+E
Sbjct: 144 VVYTLLPPLSGARYIRVVATECSPPGQCCASLKF---HKALE 182
>SB_24816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 662
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +2
Query: 119 SAFQRSFLPRTIRLWNELP-STV 184
+ F+ SF P IR+WN LP ST+
Sbjct: 628 NVFKESFFPHAIRMWNGLPVSTI 650
>SB_19530| Best HMM Match : EMI (HMM E-Value=3.5)
Length = 244
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +2
Query: 119 SAFQRSFLPRTIRLWNELP-STV 184
+ F+ SF P IR+WN LP ST+
Sbjct: 210 NVFKESFFPHAIRMWNGLPVSTI 232
>SB_25119| Best HMM Match : Ribosomal_S27 (HMM E-Value=9.4)
Length = 443
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 122 AFQRSFLPRTIRLWNELPSTV 184
+F SF PR IR WN LP +
Sbjct: 278 SFNYSFFPRAIRAWNLLPDNI 298
>SB_58576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 119 SAFQRSFLPRTIRLWN 166
+AF SF+PRTIR WN
Sbjct: 109 NAFGMSFIPRTIRTWN 124
>SB_56220| Best HMM Match : RVT_1 (HMM E-Value=3.7e-16)
Length = 453
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 119 SAFQRSFLPRTIRLWN 166
+AF SF+PRTIR WN
Sbjct: 403 NAFGMSFIPRTIRTWN 418
>SB_48902| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 119 SAFQRSFLPRTIRLWN 166
+AF SF+PRTIR WN
Sbjct: 109 NAFGMSFIPRTIRTWN 124
>SB_40983| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 119 SAFQRSFLPRTIRLWN 166
+AF SF+PRTIR WN
Sbjct: 109 NAFGMSFIPRTIRTWN 124
>SB_40552| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 119 SAFQRSFLPRTIRLWN 166
+AF SF+PRTIR WN
Sbjct: 109 NAFGMSFIPRTIRTWN 124
>SB_38731| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 119 SAFQRSFLPRTIRLWN 166
+AF SF+PRTIR WN
Sbjct: 109 NAFGMSFIPRTIRTWN 124
>SB_34180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 119 SAFQRSFLPRTIRLWN 166
+AF SF+PRTIR WN
Sbjct: 109 NAFGMSFIPRTIRTWN 124
>SB_34116| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 522
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 119 SAFQRSFLPRTIRLWN 166
+AF SF+PRTIR WN
Sbjct: 472 NAFGMSFIPRTIRTWN 487
>SB_33307| Best HMM Match : NAF1 (HMM E-Value=1.5e-18)
Length = 1085
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +3
Query: 69 HRSRVHPYYLEPLRSSTVRFRDLFCHVPSGYGMSSPPRCFPSAMTCPSS 215
HR+ HP+ P RF + PSG+ + PPR FP P S
Sbjct: 993 HRAPGHPFDQGPFLMEPGRFPPPVSY-PSGHRVPPPPRPFPMGAGQPPS 1040
>SB_33284| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 119 SAFQRSFLPRTIRLWN 166
+AF SF+PRTIR WN
Sbjct: 213 NAFGMSFIPRTIRTWN 228
>SB_32643| Best HMM Match : Carla_C4 (HMM E-Value=9.9)
Length = 159
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 119 SAFQRSFLPRTIRLWN 166
+AF SF+PRTIR WN
Sbjct: 109 NAFGMSFIPRTIRTWN 124
>SB_30890| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 119 SAFQRSFLPRTIRLWN 166
+AF SF+PRTIR WN
Sbjct: 109 NAFGMSFIPRTIRTWN 124
>SB_29924| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 119 SAFQRSFLPRTIRLWN 166
+AF SF+PRTIR WN
Sbjct: 109 NAFGMSFIPRTIRTWN 124
>SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40)
Length = 892
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 119 SAFQRSFLPRTIRLWN 166
+AF SF+PRTIR WN
Sbjct: 842 NAFGMSFIPRTIRTWN 857
>SB_24244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 119 SAFQRSFLPRTIRLWN 166
+AF SF+PRTIR WN
Sbjct: 109 NAFGMSFIPRTIRTWN 124
>SB_22251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 497
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 119 SAFQRSFLPRTIRLWN 166
+AF SF+PRTIR WN
Sbjct: 447 NAFGMSFIPRTIRTWN 462
>SB_36764| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 119 SAFQRSFLPRTIRLWN 166
+AF SF+PRTIR WN
Sbjct: 109 NAFGMSFIPRTIRTWN 124
>SB_36762| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 119 SAFQRSFLPRTIRLWN 166
+AF SF+PRTIR WN
Sbjct: 109 NAFGMSFIPRTIRTWN 124
>SB_29800| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 119 SAFQRSFLPRTIRLWN 166
+AF SF+PRTIR WN
Sbjct: 109 NAFGMSFIPRTIRTWN 124
>SB_26110| Best HMM Match : HipA_C (HMM E-Value=5.5)
Length = 210
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 122 AFQRSFLPRTIRLWNELPSTV 184
AF SF R IR+WN LP+ V
Sbjct: 161 AFNYSFFARAIRIWNLLPNDV 181
>SB_25497| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 372
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 122 AFQRSFLPRTIRLWNELPSTV 184
AF SF R IR+WN LP+ V
Sbjct: 315 AFNYSFFARAIRIWNLLPNDV 335
>SB_24298| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 119 SAFQRSFLPRTIRLWN 166
+AF SF+PRTIR WN
Sbjct: 109 NAFGMSFIPRTIRTWN 124
>SB_19305| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 119 SAFQRSFLPRTIRLWN 166
+AF SF+PRTIR WN
Sbjct: 109 NAFGMSFIPRTIRTWN 124
>SB_14729| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 122 AFQRSFLPRTIRLWNELPSTV 184
AF SF R IR+WN LP+ V
Sbjct: 266 AFNYSFFARAIRIWNLLPNDV 286
>SB_14496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 110
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 119 SAFQRSFLPRTIRLWN 166
+AF SF+PRTIR WN
Sbjct: 60 NAFGMSFIPRTIRTWN 75
>SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28)
Length = 570
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 122 AFQRSFLPRTIRLWNELPSTV 184
AF SF R IR+WN LP+ V
Sbjct: 521 AFNYSFFARAIRIWNLLPNDV 541
>SB_2897| Best HMM Match : RVT_1 (HMM E-Value=3e-33)
Length = 609
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 134 SFLPRTIRLWNELPS 178
SF PRTIR WN LP+
Sbjct: 569 SFFPRTIRHWNTLPN 583
>SB_1926| Best HMM Match : PH (HMM E-Value=1.4e-23)
Length = 998
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = -1
Query: 303 EWLPSPMDFSNARGRASRCLPLNTLH 226
E+ SPM N +SRCL LNTLH
Sbjct: 611 EYHESPMRRHNQSCHSSRCLLLNTLH 636
>SB_11782| Best HMM Match : P53_tetramer (HMM E-Value=3.3e-11)
Length = 484
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +3
Query: 81 VHPYYLEPLRSSTVRFRDLFCHVPSGYGMSSPPRCFPSAMTCPSSNEACGEY 236
V+ ++ EP+ SS ++ HVPS +PP +P+ P++ + GEY
Sbjct: 154 VNGFHTEPVESSREQYHH---HVPSAI---TPPPDYPTTNLVPANTDFPGEY 199
>SB_30049| Best HMM Match : FBA_2 (HMM E-Value=7)
Length = 282
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 122 AFQRSFLPRTIRLWNELPSTV 184
++ SF R IR+WN LPS V
Sbjct: 233 SYNYSFFARAIRIWNLLPSNV 253
>SB_22937| Best HMM Match : HD (HMM E-Value=1e-11)
Length = 248
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -2
Query: 305 VSGYRRPWTSAMPGAEPAAAYRLILSTSLV*RRTCHSARETPWRGAHS 162
+S +RR W +A AE AA RL++ T+ A+ P R S
Sbjct: 27 ISHFRRVWATAQQLAEETAADRLVILTACYFHDIVSLAKNHPERSRSS 74
>SB_40344| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 401
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 122 AFQRSFLPRTIRLWNELP 175
AF+ SF RTI+ WN+LP
Sbjct: 367 AFKNSFFCRTIKEWNKLP 384
>SB_8004| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 989
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 5/32 (15%)
Frame = +1
Query: 73 GVEFIHTTWSHCGHPQ-----CVSEIFFATYH 153
G +I TW C Q CVS+ F A YH
Sbjct: 957 GTNYIRYTWQQCAKKQKDVIKCVSKPFLAVYH 988
>SB_55061| Best HMM Match : Defensin_beta (HMM E-Value=6.9)
Length = 350
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +3
Query: 102 PLRSSTVRFRDLFCHVPSGYGMSSPPRCFPSAMTCPSSNEAC 227
P STV ++C+ Y +P C+P+ +C + ++C
Sbjct: 9 PPSRSTVSISLIYCNPNPDYCYPNPDSCYPNPDSCYPNPDSC 50
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,793,911
Number of Sequences: 59808
Number of extensions: 450383
Number of successful extensions: 1187
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 1113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1184
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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