Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0307
         (696 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y08110-1|CAA69325.1| 2214|Homo sapiens mosaic protein LR11 protein.    31   5.2  
U60975-1|AAC50891.2| 2214|Homo sapiens gp250 precursor protein.        31   5.2  
AF060512-1|AAG43130.1|  214|Homo sapiens My017 protein protein.        30   9.1  

>Y08110-1|CAA69325.1| 2214|Homo sapiens mosaic protein LR11 protein.
          Length = 2214

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 16/55 (29%), Positives = 22/55 (40%)
 Frame = +3

Query: 99   EPLRSSTVRFRDLFCHVPSGYGMSSPPRCFPSAMTCPSSNEACGEY*AVGSGWLC 263
            E + SS +   DL C  P GY + +   C     TC  +   C     + S W C
Sbjct: 1044 EDVSSSVLPSGDLMCDCPQGYQLKN-NTCVKEENTCLRNQYRCSNGNCINSIWWC 1097


>U60975-1|AAC50891.2| 2214|Homo sapiens gp250 precursor protein.
          Length = 2214

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 16/55 (29%), Positives = 22/55 (40%)
 Frame = +3

Query: 99   EPLRSSTVRFRDLFCHVPSGYGMSSPPRCFPSAMTCPSSNEACGEY*AVGSGWLC 263
            E + SS +   DL C  P GY + +   C     TC  +   C     + S W C
Sbjct: 1044 EDVSSSVLPSGDLMCDCPQGYQLKN-NTCVKEENTCLRNQYRCSNGNCINSIWWC 1097


>AF060512-1|AAG43130.1|  214|Homo sapiens My017 protein protein.
          Length = 214

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 23/52 (44%), Positives = 24/52 (46%)
 Frame = +2

Query: 188 PERYDMSFFKRGLWRVLSGRQRLALPLALLKSMGDGNHSPSGGPYARLPTKA 343
           P R D     RGL   L  R RL LPL LL   G   H   G  + RLPT A
Sbjct: 138 PPRPDAGAALRGLHGELRQRGRL-LPLFLLGGEGLRPHRARGHLHPRLPTTA 188


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,612,003
Number of Sequences: 237096
Number of extensions: 2230499
Number of successful extensions: 4907
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4907
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8007229802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)