Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0307
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82082-11|CAH10808.1|  721|Caenorhabditis elegans Hypothetical p...    29   4.2  
Z82082-9|CAB04966.2|  586|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AL132902-16|CAB82004.2|  721|Caenorhabditis elegans Hypothetical...    29   4.2  
AY305835-1|AAR11980.1|  618|Caenorhabditis elegans nuclear recep...    28   5.5  
AF273819-1|AAG15168.1|  619|Caenorhabditis elegans nuclear recep...    28   5.5  
AF047660-7|AAM54166.1|  577|Caenorhabditis elegans Nuclear hormo...    28   5.5  
Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical pr...    28   7.3  

>Z82082-11|CAH10808.1|  721|Caenorhabditis elegans Hypothetical
           protein Y71A12B.12a protein.
          Length = 721

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 508 ELTRIVNNSLYFITNKKNHKCMYFI*HFASDILV 609
           E+ ++V   +   T  K  KCM +I H A D+L+
Sbjct: 512 EICKLVAEKVSMRTYNKKEKCMQYINHGAMDVLI 545


>Z82082-9|CAB04966.2|  586|Caenorhabditis elegans Hypothetical
           protein Y71A12B.12b protein.
          Length = 586

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 508 ELTRIVNNSLYFITNKKNHKCMYFI*HFASDILV 609
           E+ ++V   +   T  K  KCM +I H A D+L+
Sbjct: 377 EICKLVAEKVSMRTYNKKEKCMQYINHGAMDVLI 410


>AL132902-16|CAB82004.2|  721|Caenorhabditis elegans Hypothetical
           protein Y71A12B.12a protein.
          Length = 721

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 508 ELTRIVNNSLYFITNKKNHKCMYFI*HFASDILV 609
           E+ ++V   +   T  K  KCM +I H A D+L+
Sbjct: 512 EICKLVAEKVSMRTYNKKEKCMQYINHGAMDVLI 545


>AY305835-1|AAR11980.1|  618|Caenorhabditis elegans nuclear receptor
           NHR-66 protein.
          Length = 618

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +3

Query: 39  ASRFYHRTARHRSRVHPYYLEPLRSSTVRFR-DLFCHVPSGYGMSSPPRCFPSAMTCPSS 215
           A ++   T +H +  HP+ L+ + +  +    D+F  +      SSPP  F  A   PSS
Sbjct: 77  ARKYSMDTIQHHTMQHPHQLQYIPNHFMTASTDVFAAMDMSQKQSSPPGIFKIAKNEPSS 136

Query: 216 N 218
           +
Sbjct: 137 S 137


>AF273819-1|AAG15168.1|  619|Caenorhabditis elegans nuclear receptor
           NHR-66 protein.
          Length = 619

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +3

Query: 39  ASRFYHRTARHRSRVHPYYLEPLRSSTVRFR-DLFCHVPSGYGMSSPPRCFPSAMTCPSS 215
           A ++   T +H +  HP+ L+ + +  +    D+F  +      SSPP  F  A   PSS
Sbjct: 76  ARKYSMDTIQHHTMQHPHQLQYIPNHFMTASTDVFAAMDMSQKQSSPPGIFKIAKNEPSS 135

Query: 216 N 218
           +
Sbjct: 136 S 136


>AF047660-7|AAM54166.1|  577|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 66, isoform a protein.
          Length = 577

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +3

Query: 39  ASRFYHRTARHRSRVHPYYLEPLRSSTVRFR-DLFCHVPSGYGMSSPPRCFPSAMTCPSS 215
           A ++   T +H +  HP+ L+ + +  +    D+F  +      SSPP  F  A   PSS
Sbjct: 34  ARKYSMDTIQHHTMQHPHQLQYIPNHFMTASTDVFAAMDMSQKQSSPPGIFKIAKNEPSS 93

Query: 216 N 218
           +
Sbjct: 94  S 94


>Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical protein
            F36H2.3 protein.
          Length = 1388

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
 Frame = -2

Query: 302  SGYRRPWTSAMPGAEPAAAYRLILSTSLV*RRTCHSARETPWRGAHSIAGWYVAK-KISE 126
            SGY  PWT+         A + ++ TS+     C ++  +P  G  S +G  V +   + 
Sbjct: 1271 SGYFAPWTAGSTATMSCPAGQTVIGTSI---SYCTNSAWSPALG--SCSGSSVGQASTTT 1325

Query: 125  THCG----*PQWLQVVWMNSTPVAGGAMVKTRC 39
            T C      P +  +V   + P + G MV  +C
Sbjct: 1326 TTCSFLPIAPPYGSIVTSQTAPFSAGTMVTLQC 1358


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,150,326
Number of Sequences: 27780
Number of extensions: 331485
Number of successful extensions: 826
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)