Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0307
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein heli...    29   2.9  
At4g28630.1 68417.m04093 ABC transporter family protein identica...    28   5.1  
At4g28620.1 68417.m04092 ABC transporter family protein identica...    28   5.1  

>At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein
           helicase, putative 
          Length = 2172

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -1

Query: 333 GRRAYGPPDGEWLP-SPMDFSNARGRASR 250
           G + Y P  GEW+  SP+D     GRA R
Sbjct: 855 GTQVYNPERGEWMELSPLDVMQMIGRAGR 883


>At4g28630.1 68417.m04093 ABC transporter family protein identical
           to half-molecule ABC transporter ATM1 GI:9964117 from
           [Arabidopsis thaliana]
          Length = 678

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 185 FPERYDMSFFKRGLWRVLSGRQRLALPLALLKS 283
           FP++Y  +  +RGL      +QR+AL  A LKS
Sbjct: 559 FPDKYSTAVGERGLMLSGGEKQRVALARAFLKS 591


>At4g28620.1 68417.m04092 ABC transporter family protein identical
           to half-molecule ABC transporter ATM2 GI:9964119 from
           [Arabidopsis thaliana]
          Length = 680

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 185 FPERYDMSFFKRGLWRVLSGRQRLALPLALLKS 283
           FP++Y  +  +RGL      +QR+AL  A LKS
Sbjct: 561 FPDKYSTAVGERGLMLSGGEKQRVALARAFLKS 593


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,236,099
Number of Sequences: 28952
Number of extensions: 310112
Number of successful extensions: 677
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)