Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0306
         (786 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000E462EF Cluster: PREDICTED: similar to CG31332-PD...    40   0.071
UniRef50_Q7ZXZ6 Cluster: Ecrg4-A protein; n=5; Tetrapoda|Rep: Ec...    36   1.2  
UniRef50_UPI0000E499DB Cluster: PREDICTED: hypothetical protein;...    34   3.5  
UniRef50_UPI0000E1E788 Cluster: PREDICTED: hypothetical protein;...    33   8.1  
UniRef50_A7DAV8 Cluster: Putative uncharacterized protein precur...    33   8.1  
UniRef50_Q22SF7 Cluster: Putative uncharacterized protein; n=1; ...    33   8.1  
UniRef50_A2FI35 Cluster: Putative uncharacterized protein; n=1; ...    33   8.1  

>UniRef50_UPI0000E462EF Cluster: PREDICTED: similar to CG31332-PD,
           partial; n=1; Strongylocentrotus purpuratus|Rep:
           PREDICTED: similar to CG31332-PD, partial -
           Strongylocentrotus purpuratus
          Length = 539

 Score = 39.9 bits (89), Expect = 0.071
 Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
 Frame = +1

Query: 367 NPRTVSKLRPTIRESIPSAEPKLPRSGSKSVSRATEQF---PEPKSGPVASQNQ 519
           N R +  LR T  +S+PS EPK+P+S +K+V  A  ++   P+ + GPV  +++
Sbjct: 447 NDRQLRTLRITTGQSMPSMEPKVPKSSTKAVRIAAPKYKSTPKGRPGPVGRRSK 500


>UniRef50_Q7ZXZ6 Cluster: Ecrg4-A protein; n=5; Tetrapoda|Rep:
           Ecrg4-A protein - Xenopus laevis (African clawed frog)
          Length = 136

 Score = 35.9 bits (79), Expect = 1.2
 Identities = 20/56 (35%), Positives = 30/56 (53%)
 Frame = +3

Query: 264 ISITIMLIILLCPLERTQLQLVQQFQTRAAMVGLKPKDSFKTSPNNQGINSKRRTK 431
           + +  +L+ILLCP      +L +  Q R A+   KP  S K S  N+ +NS +R K
Sbjct: 2   VVLLFLLVILLCPDSTNGNKLRKMLQKREAVEPSKPIVSVKESKANEFLNSLKRPK 57


>UniRef50_UPI0000E499DB Cluster: PREDICTED: hypothetical protein;
           n=2; Strongylocentrotus purpuratus|Rep: PREDICTED:
           hypothetical protein - Strongylocentrotus purpuratus
          Length = 939

 Score = 34.3 bits (75), Expect = 3.5
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +1

Query: 391 RPTIRESIPSAEPKLPRSGSKSVSRATEQFPEPKSGPVASQNQYG 525
           +PT  +++   EP +  +GS+ VSRA    P P  GP  S N  G
Sbjct: 212 QPTQDQALDGVEPNVSETGSQPVSRAAT--PSPSPGPTGSGNSPG 254


>UniRef50_UPI0000E1E788 Cluster: PREDICTED: hypothetical protein;
           n=2; Catarrhini|Rep: PREDICTED: hypothetical protein -
           Pan troglodytes
          Length = 332

 Score = 33.1 bits (72), Expect = 8.1
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
 Frame = +1

Query: 358 WVSNPRTVSKLRPTIRESIPSAEPKLPRSGS--------KSVSRATEQFPEPKS-GPVAS 510
           W+  P  V++LRPT     P+ +P     GS         S+S + + FP+P + G + +
Sbjct: 83  WIPGPAGVAELRPTPGSGAPALDPSQDSHGSVQEEARPIPSLSLSLQPFPQPATGGAIIA 142

Query: 511 QNQYGVNQP 537
            +Q   +QP
Sbjct: 143 SSQNWRSQP 151


>UniRef50_A7DAV8 Cluster: Putative uncharacterized protein
           precursor; n=1; Methylobacterium extorquens PA1|Rep:
           Putative uncharacterized protein precursor -
           Methylobacterium extorquens PA1
          Length = 160

 Score = 33.1 bits (72), Expect = 8.1
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +1

Query: 124 KATKTSQRKPIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNRSSRP 261
           ++ +T Q  P ++ R R C  I S  HG+HPP +   VSR  +  P
Sbjct: 65  RSEQTVQVGPGRIGRLR-CPGIESVHHGIHPPVEIPSVSRIEAFDP 109


>UniRef50_Q22SF7 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 2420

 Score = 33.1 bits (72), Expect = 8.1
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
 Frame = +3

Query: 210 PPANQAYXXXXXXXFKAKISITIMLIILLCP-LERTQLQLVQQFQTRAAMVGLKPKDSFK 386
           P     Y       F+ +  IT + + ++CP LE    Q V Q+ +   + G  P+D +K
Sbjct: 127 PQGAIVYPTYQYNNFQLRSDITQLTLCIICPPLENKFTQFVGQYSSIKMITGFYPQDIYK 186

Query: 387 TSPNNQGINSK 419
              N   +N +
Sbjct: 187 LLINENNMNDQ 197


>UniRef50_A2FI35 Cluster: Putative uncharacterized protein; n=1;
            Trichomonas vaginalis G3|Rep: Putative uncharacterized
            protein - Trichomonas vaginalis G3
          Length = 1307

 Score = 33.1 bits (72), Expect = 8.1
 Identities = 33/115 (28%), Positives = 45/115 (39%), Gaps = 1/115 (0%)
 Frame = +1

Query: 151  PIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNRSSRPKSV*QLC*LSCCAHWNVPSYS*S 330
            P K   K+K    SS +  L PP KP    +  SS  +                P+   S
Sbjct: 885  PKKPEPKKKLSSSSSDEEDLPPPKKPEPAKKLSSSSDEE-------EIPPKKPEPAKKIS 937

Query: 331  NNSKPGQLWWVSNPRTVSKLRPTIRESIPSAEPKLPRSGSK-SVSRATEQFPEPK 492
            ++S    L     P+ V KL  +  E IP   PK P    K S S + ++ P PK
Sbjct: 938  SSSSSDDLPPPKKPQPVQKLSSSSDEEIP---PKKPEPAKKISSSSSEDELPHPK 989


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 767,360,222
Number of Sequences: 1657284
Number of extensions: 15748535
Number of successful extensions: 42119
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 39987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42067
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 66673674990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)