Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0306
         (786 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    30   0.43 
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    29   0.76 
SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   1.00 
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S...    28   1.3  
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    28   1.3  
SPACUNK4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   1.7  
SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   3.0  
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|...    26   5.3  
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    25   9.3  

>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +1

Query: 379 VSKLRPTIRESIPSAEPKLPRSGSKSVSRATEQFPEPKSGPVASQN 516
           +++  PT  +  PS  P    S  KSV+RA+E  P  K     S N
Sbjct: 194 ITEANPTCEKRKPSRSPSPMLSKKKSVARASENEPSAKQNKSFSGN 239


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 20/53 (37%), Positives = 26/53 (49%)
 Frame = +1

Query: 100 SVGSLTWSKATKTSQRKPIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNRSSR 258
           S+  L  S A K  Q+ P K  R+R      S + GL+P   PT  S+ RS R
Sbjct: 342 SLSPLDHSSAEKEMQKAPAKNKRRRT----GSLETGLYPKESPT-PSKKRSKR 389


>SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 28.7 bits (61), Expect = 1.00
 Identities = 11/48 (22%), Positives = 26/48 (54%)
 Frame = +1

Query: 127 ATKTSQRKPIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNRSSRPKSV 270
           ++   +RKP +  +    K  +S+ + +  PT PT+++    S P+++
Sbjct: 80  SSSEDERKPARHPQSSSQKPFASSTYNVELPTSPTKITNIGQSSPRAL 127


>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 272

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = +1

Query: 337 SKPGQLWWVSNPRTVSKLRPTIRESIPSAEPKLPR---SGSKSVSRATEQFPEPKSGPVA 507
           +KPG+   V     + K +   +  + S E K+ R   S S+S+S  TEQ   PK  PV 
Sbjct: 150 TKPGEPE-VKQETNLQKEKKESKVKLESKEEKISRNLRSSSRSISPVTEQPQSPKIQPVI 208

Query: 508 SQNQ 519
            + +
Sbjct: 209 PEKK 212


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +3

Query: 405 GINSKRRTKITTVR-LKISFKGNRTISRTKIRSSCKPEPVWSEPT*LCSRA 554
           GIN    +K + +R L  +FK + TI   +I  +C P    ++   LCS A
Sbjct: 824 GINKSEESKASMLRALTKTFKLDETIDLNEIAKNCHPNFTGADMYALCSDA 874


>SPACUNK4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 188

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +1

Query: 88  RKK*SVGSLTWSKATKTSQRKPIKLNRKRKCKEISSTQHGLHPP--TKPTRVSRNRSSRP 261
           R+K  + S     + K   + P K ++KRK  E+S     LH P  +   +  +N++ + 
Sbjct: 125 RRKQELVSKKAEASRKMEVKAPAKESKKRKVNELSQDVISLHSPKESNARKTKKNKNKKK 184

Query: 262 K 264
           K
Sbjct: 185 K 185


>SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 313

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +1

Query: 376 TVSKLRPTIRESIPSAEPKLPRSGSKSVS 462
           TVS   P+  E  PS+ P LP +GS+S S
Sbjct: 114 TVSIASPSTPELPPSSSPLLPPNGSESSS 142


>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 714

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 512 WLATGPDFGSGNCSVALETDFEPDRGNFGSA 420
           WL++   FGS   +V +E D + D  +F ++
Sbjct: 298 WLSSSKPFGSSTPNVVIEFDSDDDGDDFSNS 328


>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 19/58 (32%), Positives = 23/58 (39%)
 Frame = +1

Query: 343 PGQLWWVSNPRTVSKLRPTIRESIPSAEPKLPRSGSKSVSRATEQFPEPKSGPVASQN 516
           PG L  V +     K RP    S P          S+SVS A+  F  P S   +S N
Sbjct: 74  PGSLASVKSSSLAKKARPFTASSNPRMPKSAHPISSRSVS-ASSHFGRPASAVSSSLN 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,089,202
Number of Sequences: 5004
Number of extensions: 62538
Number of successful extensions: 172
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)