Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0306
         (786 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0192 - 23128460-23128502,23129130-23129216,23129299-231294...    29   5.5  
03_05_0861 - 28348669-28348711,28349471-28349557,28349640-283497...    29   5.5  
03_02_0981 + 12917195-12917572,12917661-12917818,12918732-129187...    29   5.5  
02_05_0496 - 29499959-29500653,29501039-29501093                       29   5.5  
12_02_0370 + 18139557-18140469,18140561-18140704,18140804-181409...    28   7.3  
04_04_1473 - 33843414-33843788,33843833-33844261,33845738-33846100     28   9.7  
01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647     28   9.7  

>05_05_0192 -
           23128460-23128502,23129130-23129216,23129299-23129443,
           23130812-23130872,23131046-23131164,23131320-23131374
          Length = 169

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 137 VFVALDHVNDPTDYFFRNVENLSWF 63
           VF   DH     D+FF++ EN+S+F
Sbjct: 52  VFSTKDHRQVKNDFFFKSAENISFF 76


>03_05_0861 -
           28348669-28348711,28349471-28349557,28349640-28349784,
           28350832-28350900,28351147-28351207,28351375-28351493,
           28351659-28351713
          Length = 192

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 137 VFVALDHVNDPTDYFFRNVENLSWF 63
           VF   DH     D+FF++ EN+S+F
Sbjct: 52  VFSTKDHRQVKNDFFFKSAENISFF 76


>03_02_0981 +
           12917195-12917572,12917661-12917818,12918732-12918765,
           12918942-12919074,12919167-12919221,12919281-12920064,
           12920440-12920769,12920788-12920895,12921259-12921678,
           12921775-12921847,12922291-12922376,12922873-12922992,
           12923086-12923156,12923350-12923449
          Length = 949

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 286 LSCCAHWNVPSYS*SNNSKPGQLWWVSNPRTVSKL 390
           LSC +H   P  + S  S+ G +W V   + +SKL
Sbjct: 750 LSCSSHSEEPKVNGSERSQAGSVWDVFRRQDISKL 784


>02_05_0496 - 29499959-29500653,29501039-29501093
          Length = 249

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/48 (35%), Positives = 19/48 (39%)
 Frame = +1

Query: 394 PTIRESIPSAEPKLPRSGSKSVSRATEQFPEPKSGPVASQNQYGVNQP 537
           P   +  P AEPK P+ G    S      PEP   P   Q Q    QP
Sbjct: 109 PPPAQDAPPAEPKPPKRGKNKKSGRVRFGPEPPP-PEQQQQQQQQQQP 155


>12_02_0370 +
           18139557-18140469,18140561-18140704,18140804-18140956,
           18141032-18141147,18141231-18141398,18142110-18142334,
           18142458-18142577
          Length = 612

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +1

Query: 364 SNPRTVSKLRPTIRESIPSAEPKLPRSGSKSVSRATEQFPEPKSGP 501
           S P T S+  P +  S PS++P  P   +  V     + P P+  P
Sbjct: 32  SQPTTTSRSIPVVLPSAPSSKPPPPTQTAPPVPVVISEPPPPQPQP 77


>04_04_1473 - 33843414-33843788,33843833-33844261,33845738-33846100
          Length = 388

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = +1

Query: 112 LTWSKATKTSQRKPIKLNR-KRKCKEISSTQHGLHPPTKPTRVSRN-RSSRPKSV 270
           +T+++  +    + ++L + K+K KE    Q    PP  PT+V+    + +PKS+
Sbjct: 329 ITFAEMYRRKMARDLELAKLKKKAKEQRQLQQAALPPPPPTQVAAELAAQKPKSL 383


>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
          Length = 252

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 415 PSAEPKLPRSGSKSVSRATEQFPEPKSGP 501
           P  +PK P+ G K   +  +  P+PK GP
Sbjct: 194 PKPKPKPPKPGPKPKPKPPKPGPKPKPGP 222


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,942,293
Number of Sequences: 37544
Number of extensions: 440131
Number of successful extensions: 1205
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1203
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)