Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0306
         (786 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.35 
SB_33219| Best HMM Match : RhoGAP (HMM E-Value=0.0014)                 31   1.1  
SB_53134| Best HMM Match : PAN (HMM E-Value=0.0002)                    31   1.4  
SB_5548| Best HMM Match : PT (HMM E-Value=3.1)                         31   1.4  
SB_51133| Best HMM Match : Pox_A32 (HMM E-Value=0.028)                 29   4.3  
SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_27641| Best HMM Match : Ank (HMM E-Value=8.6e-05)                   29   5.6  
SB_11497| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_56201| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_3455| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.5  
SB_38668| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  
SB_35554| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  

>SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2806

 Score = 32.7 bits (71), Expect = 0.35
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = +1

Query: 73   RFSTFRKK*SVGSLTWSKATKTSQRKPIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNRS 252
            + S ++++    S+ WS   K   +KP  L + +K  + +   HG     + T  S  + 
Sbjct: 2517 QLSNYKRRWHKSSIAWSSFEKRQLQKPSSLQQSKKKDDPAGGSHG---KNRSTSFSGEKK 2573

Query: 253  SRPKS 267
             RPKS
Sbjct: 2574 KRPKS 2578


>SB_33219| Best HMM Match : RhoGAP (HMM E-Value=0.0014)
          Length = 399

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = +1

Query: 394 PTIRESIPSAEPKLPRSG--SKSVSRATEQFPEPKS-GPVASQNQYGVNQ 534
           P +R++IPS+   LPR G      +R  +  P PK    VA ++Q G N+
Sbjct: 229 PRVRKTIPSSTDSLPRPGRPPSPSTRGMKPLPPPKKPDVVAEKDQKGGNE 278


>SB_53134| Best HMM Match : PAN (HMM E-Value=0.0002)
          Length = 648

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = +1

Query: 328 SNNSKPGQLWWVSN-PRTVSKLRPTIRESIPSAEPKLPRSGSKSVSRATEQFPEPKSGPV 504
           S + KPGQL + ++ P+T+ +L+ T +    S+E K  +  S   +R    +P+ K  P 
Sbjct: 563 SRSRKPGQLLFGNDLPKTLQELKTTNKIMNKSSEAKPFKRSSNMTARPGNNYPQNK--PF 620

Query: 505 ASQNQYGVNQP 537
                 G N P
Sbjct: 621 LPGRGRGYNPP 631


>SB_5548| Best HMM Match : PT (HMM E-Value=3.1)
          Length = 157

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +1

Query: 364 SNPRTVSK-LRPTIRESIPSAEPKLPRSGSKSVSRATEQFPEPKSGPVASQNQYG 525
           ++P+T  K +R    ++ P   PK  R   +  S  T     PK+ P  SQ Q G
Sbjct: 9   TSPKTSQKTMRIKSLKTTPKTSPKTRRKTGRKTSPKTSPKTSPKTSPKTSQKQAG 63


>SB_51133| Best HMM Match : Pox_A32 (HMM E-Value=0.028)
          Length = 1736

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 18/60 (30%), Positives = 25/60 (41%)
 Frame = +1

Query: 349 QLWWVSNPRTVSKLRPTIRESIPSAEPKLPRSGSKSVSRATEQFPEPKSGPVASQNQYGV 528
           QL W+SNP      R  IR+ +       P SGS  +       P P+S   + +   GV
Sbjct: 525 QLTWLSNPLC----RACIRDDVLVIVIDSPSSGSNGIRGVVSSSPAPRSADASGKLSEGV 580


>SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 707

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -3

Query: 136 FLWLWTMSMTPPIIFSGMWRTFRGSNSAVVVLISTTKSMTSEKDS 2
           FL++   S T PI++S   +TFR +   ++ + ST +S +S   S
Sbjct: 634 FLFVLVNSCTNPILYSWRLKTFRNALKKLLGIKSTRQSSSSSTSS 678


>SB_27641| Best HMM Match : Ank (HMM E-Value=8.6e-05)
          Length = 397

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 127 ATKTSQRKPIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNRSS 255
           A +T  RKP+ L R    +E+       H  + PTR+ +  +S
Sbjct: 175 AIQTPPRKPVNLTRSGSSEELLEKSTTSHKTSSPTRMFKRATS 217


>SB_11497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 196

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +1

Query: 133 KTSQRKPIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNRSSRPKS 267
           KT+++KPI L+R R  ++  +  +GL      TR+ R     PK+
Sbjct: 101 KTNKKKPIGLDRTRSEEQNGNHTYGLPNRYGSTRLLRKAVKNPKA 145


>SB_56201| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 796

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 21/76 (27%), Positives = 30/76 (39%)
 Frame = +1

Query: 310 VPSYS*SNNSKPGQLWWVSNPRTVSKLRPTIRESIPSAEPKLPRSGSKSVSRATEQFPEP 489
           VP  + SN    G L  + +   +  +R  +RE +  AE + P SGS   S  T   P  
Sbjct: 541 VPPTTPSNTPIQG-LESIEDNMNLEAIRNALREDLTPAEGRPPSSGSSGRSTPTRWHPRT 599

Query: 490 KSGPVASQNQYGVNQP 537
                +S      N P
Sbjct: 600 PGSGNSSPCSSSTNSP 615


>SB_3455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 587

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +3

Query: 372 KDSFKTSPNNQGINSKRRTKITTVRLKISFKGNRTISRTKIRSSCKPEPVW 524
           K+ F ++PNN G N K R  +   +  ++  GN+    +K+     P   W
Sbjct: 40  KNVFFSNPNN-GHNGKHRKHLPVTKKIVASTGNKQWETSKMAKEINPTDGW 89


>SB_38668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +1

Query: 106 GSLTWSKATKTSQRKPIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNRSSRPKS 267
           GS T  K  +T ++ P+  +R R  ++  +  +GL  P   TR+ R     PK+
Sbjct: 4   GSST-KKKKRTKKKSPLAWDRTRSEEQNGNHTYGLPNPYGSTRLLRKAVKNPKA 56


>SB_35554| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 464

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +1

Query: 367 NPRTVSKLRPTIRESIPSAEPKLPRSGSKSVSRATEQFPEPK 492
           NPR VS  R    ES P + P+  R   K   ++ E+FP P+
Sbjct: 287 NPRKVSGTR----ESCPKSHPRSFRDPRKLPEKSPEKFPGPE 324


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,422,527
Number of Sequences: 59808
Number of extensions: 490693
Number of successful extensions: 1921
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1920
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)