Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0306
         (786 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY280611-1|AAQ21364.1| 1102|Anopheles gambiae chloride/bicarbona...    26   1.1  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            25   3.5  
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    24   6.1  

>AY280611-1|AAQ21364.1| 1102|Anopheles gambiae chloride/bicarbonate
           anion exchanger protein.
          Length = 1102

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -3

Query: 148 CVGLFLWLWTMSMTPPIIFSGMWRTFRGSNSAVV 47
           CV  +++L+   ++P I F G+  T  G+N A +
Sbjct: 524 CVASWIFLYFACLSPIITFGGLLGTATGNNIAAM 557


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 339  GIVGLTVAGYVPVGTAG 289
            G+VG  + G+ PVG AG
Sbjct: 2727 GLVGGLIGGFAPVGIAG 2743


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 5/64 (7%)
 Frame = +1

Query: 337 SKPGQLWWVSNPRTVSKLRPTIRESIPSAEPKLPRSGSKSVSRAT--EQFPEP---KSGP 501
           S+P    +   PR   K  P++    P   P LP+       R T    FP P   +  P
Sbjct: 107 SQPPTTRFAPEPRAEVKFVPSVPLKTPPVRPLLPQQQQHPHQRDTGPALFPAPISHRPPP 166

Query: 502 VASQ 513
           +A Q
Sbjct: 167 IAHQ 170


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 795,717
Number of Sequences: 2352
Number of extensions: 15554
Number of successful extensions: 32
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 82328994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)