Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0306
(786 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X71428-1|CAA50559.1| 525|Homo sapiens FUS gycline rich protein ... 25 7.9
S62140-1|AAB27102.1| 526|Homo sapiens TLS protein. 25 7.9
CR456747-1|CAG33028.1| 526|Homo sapiens FUS protein. 25 7.9
BT007131-1|AAP35795.1| 526|Homo sapiens fusion, derived from t(... 25 7.9
BC026062-1|AAH26062.1| 526|Homo sapiens fusion (involved in t(1... 25 7.9
BC002459-1|AAH02459.1| 526|Homo sapiens fusion (involved in t(1... 25 7.9
BC000402-1|AAH00402.1| 526|Homo sapiens fusion (involved in t(1... 25 7.9
AF071213-2|AAC35284.1| 525|Homo sapiens FUS/TLS protein protein. 25 7.9
AF071213-1|AAC35285.1| 526|Homo sapiens FUS/TLS protein protein. 25 7.9
X71427-1|CAA50558.1| 462|Homo sapiens FUS-CHOP protein fusion p... 25 8.0
S62138-1|AAB27103.1| 462|Homo sapiens TLS-CHOP protein. 25 8.0
AJ295163-1|CAC15058.1| 226|Homo sapiens FUS/ATF-1 protein protein. 25 8.5
S75762-1|AAB32714.2| 195|Homo sapiens FUS-CHOP fusion protein p... 25 8.6
S75763-1|AAB32715.1| 126|Homo sapiens FUS-CHOP protein. 25 9.2
>X71428-1|CAA50559.1| 525|Homo sapiens FUS gycline rich protein
protein.
Length = 525
Score = 24.6 bits (51), Expect(2) = 7.9
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 442 SGSKSVSRATEQFPEPKSGPVASQNQYGVNQ 534
SGS S + + +P+SG + Q YG Q
Sbjct: 109 SGSYGSSSQSSSYGQPQSGSYSQQPSYGGQQ 139
Score = 24.2 bits (50), Expect(2) = 7.9
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +1
Query: 640 GQNSKLGQFNGQSY*PWPNFSGQKNQFNWVRGLG 741
GQ GQ QSY P P GQ+NQ+N G G
Sbjct: 137 GQQQSYGQ--QQSYNP-PQGYGQQNQYNSSSGGG 167
>S62140-1|AAB27102.1| 526|Homo sapiens TLS protein.
Length = 526
Score = 24.6 bits (51), Expect(2) = 7.9
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 442 SGSKSVSRATEQFPEPKSGPVASQNQYGVNQ 534
SGS S + + +P+SG + Q YG Q
Sbjct: 110 SGSYGSSSQSSSYGQPQSGSYSQQPSYGGQQ 140
Score = 24.2 bits (50), Expect(2) = 7.9
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +1
Query: 640 GQNSKLGQFNGQSY*PWPNFSGQKNQFNWVRGLG 741
GQ GQ QSY P P GQ+NQ+N G G
Sbjct: 138 GQQQSYGQ--QQSYNP-PQGYGQQNQYNSSSGGG 168
>CR456747-1|CAG33028.1| 526|Homo sapiens FUS protein.
Length = 526
Score = 24.6 bits (51), Expect(2) = 7.9
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 442 SGSKSVSRATEQFPEPKSGPVASQNQYGVNQ 534
SGS S + + +P+SG + Q YG Q
Sbjct: 110 SGSYGSSSQSSSYGQPQSGSYSQQPSYGGQQ 140
Score = 24.2 bits (50), Expect(2) = 7.9
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +1
Query: 640 GQNSKLGQFNGQSY*PWPNFSGQKNQFNWVRGLG 741
GQ GQ QSY P P GQ+NQ+N G G
Sbjct: 138 GQQQSYGQ--QQSYNP-PQGYGQQNQYNSSSGGG 168
>BT007131-1|AAP35795.1| 526|Homo sapiens fusion, derived from
t(12;16) malignant liposarcoma protein.
Length = 526
Score = 24.6 bits (51), Expect(2) = 7.9
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 442 SGSKSVSRATEQFPEPKSGPVASQNQYGVNQ 534
SGS S + + +P+SG + Q YG Q
Sbjct: 110 SGSYGSSSQSSSYGQPQSGSYSQQPSYGGQQ 140
Score = 24.2 bits (50), Expect(2) = 7.9
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +1
Query: 640 GQNSKLGQFNGQSY*PWPNFSGQKNQFNWVRGLG 741
GQ GQ QSY P P GQ+NQ+N G G
Sbjct: 138 GQQQSYGQ--QQSYNP-PQGYGQQNQYNSSSGGG 168
>BC026062-1|AAH26062.1| 526|Homo sapiens fusion (involved in
t(12;16) in malignant liposarcoma) protein.
Length = 526
Score = 24.6 bits (51), Expect(2) = 7.9
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 442 SGSKSVSRATEQFPEPKSGPVASQNQYGVNQ 534
SGS S + + +P+SG + Q YG Q
Sbjct: 110 SGSYGSSSQSSSYGQPQSGSYSQQPSYGGQQ 140
Score = 24.2 bits (50), Expect(2) = 7.9
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +1
Query: 640 GQNSKLGQFNGQSY*PWPNFSGQKNQFNWVRGLG 741
GQ GQ QSY P P GQ+NQ+N G G
Sbjct: 138 GQQQSYGQ--QQSYNP-PQGYGQQNQYNSSSGGG 168
>BC002459-1|AAH02459.1| 526|Homo sapiens fusion (involved in
t(12;16) in malignant liposarcoma) protein.
Length = 526
Score = 24.6 bits (51), Expect(2) = 7.9
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 442 SGSKSVSRATEQFPEPKSGPVASQNQYGVNQ 534
SGS S + + +P+SG + Q YG Q
Sbjct: 110 SGSYGSSSQSSSYGQPQSGSYSQQPSYGGQQ 140
Score = 24.2 bits (50), Expect(2) = 7.9
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +1
Query: 640 GQNSKLGQFNGQSY*PWPNFSGQKNQFNWVRGLG 741
GQ GQ QSY P P GQ+NQ+N G G
Sbjct: 138 GQQQSYGQ--QQSYNP-PQGYGQQNQYNSSSGGG 168
>BC000402-1|AAH00402.1| 526|Homo sapiens fusion (involved in
t(12;16) in malignant liposarcoma) protein.
Length = 526
Score = 24.6 bits (51), Expect(2) = 7.9
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 442 SGSKSVSRATEQFPEPKSGPVASQNQYGVNQ 534
SGS S + + +P+SG + Q YG Q
Sbjct: 110 SGSYGSSSQSSSYGQPQSGSYSQQPSYGGQQ 140
Score = 24.2 bits (50), Expect(2) = 7.9
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +1
Query: 640 GQNSKLGQFNGQSY*PWPNFSGQKNQFNWVRGLG 741
GQ GQ QSY P P GQ+NQ+N G G
Sbjct: 138 GQQQSYGQ--QQSYNP-PQGYGQQNQYNSSSGGG 168
>AF071213-2|AAC35284.1| 525|Homo sapiens FUS/TLS protein protein.
Length = 525
Score = 24.6 bits (51), Expect(2) = 7.9
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 442 SGSKSVSRATEQFPEPKSGPVASQNQYGVNQ 534
SGS S + + +P+SG + Q YG Q
Sbjct: 109 SGSYGSSSQSSSYGQPQSGSYSQQPSYGGQQ 139
Score = 24.2 bits (50), Expect(2) = 7.9
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +1
Query: 640 GQNSKLGQFNGQSY*PWPNFSGQKNQFNWVRGLG 741
GQ GQ QSY P P GQ+NQ+N G G
Sbjct: 137 GQQQSYGQ--QQSYNP-PQGYGQQNQYNSSSGGG 167
>AF071213-1|AAC35285.1| 526|Homo sapiens FUS/TLS protein protein.
Length = 526
Score = 24.6 bits (51), Expect(2) = 7.9
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 442 SGSKSVSRATEQFPEPKSGPVASQNQYGVNQ 534
SGS S + + +P+SG + Q YG Q
Sbjct: 110 SGSYGSSSQSSSYGQPQSGSYSQQPSYGGQQ 140
Score = 24.2 bits (50), Expect(2) = 7.9
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +1
Query: 640 GQNSKLGQFNGQSY*PWPNFSGQKNQFNWVRGLG 741
GQ GQ QSY P P GQ+NQ+N G G
Sbjct: 138 GQQQSYGQ--QQSYNP-PQGYGQQNQYNSSSGGG 168
>X71427-1|CAA50558.1| 462|Homo sapiens FUS-CHOP protein fusion
protein.
Length = 462
Score = 24.6 bits (51), Expect(2) = 8.0
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 442 SGSKSVSRATEQFPEPKSGPVASQNQYGVNQ 534
SGS S + + +P+SG + Q YG Q
Sbjct: 110 SGSYGSSSQSSSYGQPQSGSYSQQPSYGGQQ 140
Score = 24.2 bits (50), Expect(2) = 8.0
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +1
Query: 640 GQNSKLGQFNGQSY*PWPNFSGQKNQFNWVRGLG 741
GQ GQ QSY P P GQ+NQ+N G G
Sbjct: 138 GQQQSYGQ--QQSYNP-PQGYGQQNQYNSSSGGG 168
>S62138-1|AAB27103.1| 462|Homo sapiens TLS-CHOP protein.
Length = 462
Score = 24.6 bits (51), Expect(2) = 8.0
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 442 SGSKSVSRATEQFPEPKSGPVASQNQYGVNQ 534
SGS S + + +P+SG + Q YG Q
Sbjct: 110 SGSYGSSSQSSSYGQPQSGSYSQQPSYGGQQ 140
Score = 24.2 bits (50), Expect(2) = 8.0
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +1
Query: 640 GQNSKLGQFNGQSY*PWPNFSGQKNQFNWVRGLG 741
GQ GQ QSY P P GQ+NQ+N G G
Sbjct: 138 GQQQSYGQ--QQSYNP-PQGYGQQNQYNSSSGGG 168
>AJ295163-1|CAC15058.1| 226|Homo sapiens FUS/ATF-1 protein protein.
Length = 226
Score = 24.6 bits (51), Expect(2) = 8.5
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 442 SGSKSVSRATEQFPEPKSGPVASQNQYGVNQ 534
SGS S + + +P+SG + Q YG Q
Sbjct: 26 SGSYGSSSQSSSYGQPQSGSYSQQPSYGGQQ 56
Score = 24.2 bits (50), Expect(2) = 8.5
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +1
Query: 640 GQNSKLGQFNGQSY*PWPNFSGQKNQFNWVRGLG 741
GQ GQ QSY P P GQ+NQ+N G G
Sbjct: 54 GQQQSYGQ--QQSYNP-PQGYGQQNQYNSSSGGG 84
>S75762-1|AAB32714.2| 195|Homo sapiens FUS-CHOP fusion protein
protein.
Length = 195
Score = 24.6 bits (51), Expect(2) = 8.6
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 442 SGSKSVSRATEQFPEPKSGPVASQNQYGVNQ 534
SGS S + + +P+SG + Q YG Q
Sbjct: 26 SGSYGSSSQSSSYGQPQSGSYSQQPSYGGQQ 56
Score = 24.2 bits (50), Expect(2) = 8.6
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +1
Query: 640 GQNSKLGQFNGQSY*PWPNFSGQKNQFNWVRGLG 741
GQ GQ QSY P P GQ+NQ+N G G
Sbjct: 54 GQQQSYGQ--QQSYNP-PQGYGQQNQYNSSSGGG 84
>S75763-1|AAB32715.1| 126|Homo sapiens FUS-CHOP protein.
Length = 126
Score = 24.6 bits (51), Expect(2) = 9.2
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 442 SGSKSVSRATEQFPEPKSGPVASQNQYGVNQ 534
SGS S + + +P+SG + Q YG Q
Sbjct: 26 SGSYGSSSQSSSYGQPQSGSYSQQPSYGGQQ 56
Score = 24.2 bits (50), Expect(2) = 9.2
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +1
Query: 640 GQNSKLGQFNGQSY*PWPNFSGQKNQFNWVRGLG 741
GQ GQ QSY P P GQ+NQ+N G G
Sbjct: 54 GQQQSYGQ--QQSYNP-PQGYGQQNQYNSSSGGG 84
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,771,240
Number of Sequences: 237096
Number of extensions: 2586043
Number of successful extensions: 8845
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 8390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8837
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9590293096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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