Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0306
         (786 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               27   0.20 
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          24   1.8  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      24   1.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   1.8  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    23   4.3  
X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor pro...    23   4.3  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   7.4  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   9.8  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 27.1 bits (57), Expect = 0.20
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = +1

Query: 340 KPGQLWWVSNPRTVSKLRPTIRESIPSAEPKLPRSGSKSVSRATEQFPE 486
           +PG +  VS   ++ + +PT+ +  P+A+P++ R       R   Q P+
Sbjct: 714 QPGAMEQVSYLTSLERTQPTMSQMPPTAQPRMERLA--EAVRTASQIPQ 760


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 524 PYWFWLATGPDFGSGNCSVALE 459
           P + W + GP+ G+ +CSV+ E
Sbjct: 33  PLFGWGSYGPEAGNVSCSVSWE 54


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +3

Query: 366 KPKDSFKTSPNNQGINSKRRTKITTVRLKISFKGNRTISRTKIR 497
           +P  S K+       N KR+ K +T+  +   + N + ++TK+R
Sbjct: 198 EPSSSTKSYVLEGPRNGKRKRKSSTIENESETESNASSTKTKMR 241


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 17  CHTFSRTNQHNDSAVGTT 70
           C+ F +TN   DS+ GTT
Sbjct: 719 CNMFRKTNLSGDSSSGTT 736


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 208 LHPPTKPTRVSR 243
           L PPT+PTR+ R
Sbjct: 22  LDPPTRPTRLRR 33


>X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor
           protein.
          Length = 144

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 208 LHPPTKPTRVSR 243
           L PPT+PTR+ R
Sbjct: 23  LDPPTRPTRLRR 34


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 38  NQHNDSAVGTTKGSPH 85
           +QH +  +G T G PH
Sbjct: 336 HQHGNHTMGPTMGPPH 351


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = -3

Query: 142 GLFLWLWTMSMTPPIIFSGMWRTFRGSNSAVVVLIST 32
           GLFL+  T S   PI++       R   SA    I T
Sbjct: 300 GLFLFACTNSCMNPIVYGAFNIRDRNKTSARPTTIET 336


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,405
Number of Sequences: 438
Number of extensions: 4877
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)