Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0306
         (786 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g16440.1 68415.m01883 DNA replication licensing factor, putat...    28   6.1  
At5g40560.1 68418.m04922 DegP protease, putative contains simila...    28   8.1  
At3g50110.1 68416.m05478 phosphatase-related similar to PTEN1 GI...    28   8.1  

>At2g16440.1 68415.m01883 DNA replication licensing factor, putative
           similar to SP|P49717 DNA replication licensing factor
           MCM4 (CDC21 homolog) {Mus musculus}, SP|P29458 Cdc21
           protein {Schizosaccharomyces pombe}; contains Pfam
           profile PF00493: MCM2/3/5 family
          Length = 847

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +1

Query: 121 SKATKTSQRKPIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNRSSRPKS 267
           S   + +   P  L+R+R+ +  + TQ    PP  P+R++ + S+ P S
Sbjct: 22  SSPIENTYSSPAALHRRRRGRSSTPTQFAT-PPPPPSRLASSNSTPPTS 69


>At5g40560.1 68418.m04922 DegP protease, putative contains
           similarity to DegP2 protease GI:13172275 from
           [Arabidopsis thaliana]
          Length = 410

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = -2

Query: 494 DFGSGNCSV-ALETDFEPDRGNFGSALGIDSLIVGRSFETVLGFETHHSC 348
           D+  G  ++ A++TD   + GN G  + I + +VG +F+T LG   +  C
Sbjct: 94  DYAHGAINLPAIQTDAAMNPGNSGGPVCIGNKVVGVAFQT-LGHSNNIGC 142


>At3g50110.1 68416.m05478 phosphatase-related similar to PTEN1
           GI:5566292 from [Drosophila melanogaster]; contains
           prosite evidence: PS00383: Tyrosine specific protein
           phosphatases active site
          Length = 632

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +1

Query: 100 SVGSLTWSKATKTSQRKPIKLNRKRKCKEISSTQHGLHPPTKPT-RVSRNRSS 255
           S G  +W+K+ K  Q+ P + +         +++ GLH PTK +  V  +RSS
Sbjct: 98  SSGLSSWAKSFKFQQQDPNRTDSGMSAFTRFTSELGLHLPTKGSEEVGDSRSS 150


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,686,222
Number of Sequences: 28952
Number of extensions: 349316
Number of successful extensions: 963
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)