Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0305
         (518 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1DWL7 Cluster: Putative uncharacterized protein; n=1; ...    38   0.14 
UniRef50_Q1EBN0 Cluster: Putative uncharacterized protein; n=2; ...    34   2.2  
UniRef50_UPI0000E0ED81 Cluster: two component sensor histidine k...    32   6.8  
UniRef50_Q73ME3 Cluster: Putative uncharacterized protein; n=1; ...    32   9.0  
UniRef50_Q4JZ28 Cluster: Oligosaccharide repeat unit polymerase ...    32   9.0  
UniRef50_Q17811 Cluster: Putative uncharacterized protein; n=2; ...    32   9.0  

>UniRef50_Q1DWL7 Cluster: Putative uncharacterized protein; n=1;
           Coccidioides immitis|Rep: Putative uncharacterized
           protein - Coccidioides immitis
          Length = 133

 Score = 37.9 bits (84), Expect = 0.14
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
 Frame = -1

Query: 236 RCKSQMKGSQCKRKSIYENKNVKFK*IQLICYKLVYILFSI-KLCFVHSHGFLFSNHQE- 63
           R K  MK  +  RK   ENKN K +   ++ YKL+Y+L  + K   V  H  + + H E 
Sbjct: 9   RIKEAMKKDEYARKINKENKNFKEEDGIILYYKLIYVLREVRKQVMVQEHDIITAGHFEI 68

Query: 62  ESLFSRLFSIYH 27
             +  ++  IY+
Sbjct: 69  NKIIEKITRIYY 80


>UniRef50_Q1EBN0 Cluster: Putative uncharacterized protein; n=2;
           Coccidioides immitis|Rep: Putative uncharacterized
           protein - Coccidioides immitis
          Length = 180

 Score = 33.9 bits (74), Expect = 2.2
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = -1

Query: 242 QDRCKSQMKGSQCKRKSIYENKNVKFK*IQLICYKLVYILFSI-KLCFVHSHGFLFSNHQ 66
           +++ K  MK  +  RK   EN+N K K   ++ ++L+Y+L  + K   V  H  + S H 
Sbjct: 21  EEKIKEAMKKDEYTRKINKENENFKKKDGMILYHELIYVLKEVRKQVIVQEHDTVTSGHF 80

Query: 65  E 63
           E
Sbjct: 81  E 81


>UniRef50_UPI0000E0ED81 Cluster: two component sensor histidine
           kinase; n=1; alpha proteobacterium HTCC2255|Rep: two
           component sensor histidine kinase - alpha
           proteobacterium HTCC2255
          Length = 554

 Score = 32.3 bits (70), Expect = 6.8
 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +1

Query: 334 SLIIITLI--DFIYRFTMKREGNY*INDIKLFIRYRLMRGG 450
           SLI +TLI   F YR T+K  G + I  I L + +RL  GG
Sbjct: 61  SLIFLTLILEQFRYRLTIKMVGGFYIIAINLALLFRLYNGG 101


>UniRef50_Q73ME3 Cluster: Putative uncharacterized protein; n=1;
           Treponema denticola|Rep: Putative uncharacterized
           protein - Treponema denticola
          Length = 149

 Score = 31.9 bits (69), Expect = 9.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 277 FTFDTGIYDLTYYNDSRSMSLIIITLIDFIYRF 375
           + FD GI D+ YY+ S   + II +  DF Y++
Sbjct: 71  YGFDVGILDIDYYSFSSIYNEIIFSSYDFFYKY 103


>UniRef50_Q4JZ28 Cluster: Oligosaccharide repeat unit polymerase
           Wzy; n=1; Streptococcus pneumoniae|Rep: Oligosaccharide
           repeat unit polymerase Wzy - Streptococcus pneumoniae
          Length = 425

 Score = 31.9 bits (69), Expect = 9.0
 Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
 Frame = +1

Query: 277 FTFDTGIYDL-TYYNDSRSMSLI-IITLIDFI-YRFTMKREGNY*INDIKLFIRYRLMRG 447
           F +   IY++   YN S+ + L+ ++T++  +  RFT      +    I +F+ Y+ ++ 
Sbjct: 127 FLYTKIIYEIYREYNISKFLFLLALLTMVAIVNVRFTTSGMRYHLAGAIIVFLFYKEIKN 186

Query: 448 GYISKKDLIFYTYPII*VNSLVL 516
           G+   K L +Y  PI+  +S V+
Sbjct: 187 GFELNKTLFYYLIPILIHSSAVI 209


>UniRef50_Q17811 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis elegans|Rep: Putative uncharacterized
           protein - Caenorhabditis elegans
          Length = 400

 Score = 31.9 bits (69), Expect = 9.0
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = -1

Query: 215 GSQCKRKSIYENKNVKFK*IQLICYKLVYILFSIKLC---FVHSHGFLFSNHQEESL 54
           G+ CK    Y NK +K K ++L  Y   Y +FS K     F++ H F F  H+ ESL
Sbjct: 86  GNNCKHFIQYPNKQIKTKLLKLKSYSNKYKMFSRKKIYRKFLNIHCFKF--HKFESL 140


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 409,611,677
Number of Sequences: 1657284
Number of extensions: 6690114
Number of successful extensions: 13216
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13213
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32201017387
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)