Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0305
         (518 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      27   2.2  
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po...    25   6.8  
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe...    25   6.8  
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    25   6.8  

>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -1

Query: 194 SIYENKNVKFK*IQLICYKLVYILFSIKLCFVHSHGFLFSNHQEESLFSRLFSIYH 27
           S++ +    F  +  +C     +L+S     +H+  FLFS+    S F RL   YH
Sbjct: 9   SLFSSFESLFFRLFFVCSFFFPLLYSFIFATLHAFVFLFSHTLVSSQFRRLKLPYH 64


>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 104 FVHSHGFLFSNHQEESLFSRLFSIYHKVI 18
           ++ SHG L  + +E++L+S +   Y K I
Sbjct: 54  YIKSHGSLTPHPKEDALYSTIREEYQKAI 82


>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 746

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -2

Query: 517 KVQVSSLILLGKYKISNLFLIYTPPALSGSE*KVLCH 407
           K Q+ +LIL  K KIS   ++ +P + + SE   LC+
Sbjct: 32  KKQIVTLIL--KSKISTAIVLLSPKSTAASEWNYLCN 66


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 423 YSLPLNAGGVYIKKRFDILYLPNNIS 500
           Y+ P+ AG +YI   +   + PN  S
Sbjct: 89  YARPVTAGSIYIPSNYHKSFSPNTFS 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,818,752
Number of Sequences: 5004
Number of extensions: 31508
Number of successful extensions: 66
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)