Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0305
         (518 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1059 - 30020877-30021539,30022367-30022375                       30   1.3  
09_06_0007 + 20155697-20156107                                         29   1.7  

>03_05_1059 - 30020877-30021539,30022367-30022375
          Length = 223

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 10/24 (41%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
 Frame = -1

Query: 152 LICYKLV-YILFSIKLCFVHSHGF 84
           L C++L+ +++F I +C++ SHGF
Sbjct: 140 LFCFRLIIWLMFIIYICYICSHGF 163


>09_06_0007 + 20155697-20156107
          Length = 136

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -3

Query: 504 VHLYYWVSIKYQIFF*YIPPPH*AVANKKFYV 409
           VH YYW +I +   +  +PPP+  +   +F++
Sbjct: 50  VHRYYWSAISHSPLYPPLPPPNPEILILRFFI 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,348,254
Number of Sequences: 37544
Number of extensions: 155533
Number of successful extensions: 246
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)