Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0305
         (518 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles ...    23   8.1  
AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    23   8.1  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    23   8.1  
AY578810-1|AAT07315.1|  897|Anopheles gambiae smurf protein.           23   8.1  

>M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 574

 Score = 22.6 bits (46), Expect = 8.1
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = -1

Query: 290 VSKVNYRSNGRSKPHEQDRCKSQMKGSQCKRKSI 189
           V +  YR     KP  Q + + Q +  Q +R+++
Sbjct: 265 VVRRRYRGKATGKPRSQQQPQQQQQQRQLQRQAV 298


>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 8.1
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -1

Query: 92  HGFLFSNHQEESLFSRLFSIYHKVIMSTLN 3
           HG +  N   + L+  L S Y+K++   +N
Sbjct: 19  HGAVAGNPDAKRLYDDLLSNYNKLVRPVVN 48


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 8.1
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -1

Query: 92  HGFLFSNHQEESLFSRLFSIYHKVIMSTLN 3
           HG +  N   + L+  L S Y+K++   +N
Sbjct: 19  HGAVAGNPDAKRLYDDLLSNYNKLVRPVVN 48


>AY578810-1|AAT07315.1|  897|Anopheles gambiae smurf protein.
          Length = 897

 Score = 22.6 bits (46), Expect = 8.1
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 412 IKLFIRYRLMRG 447
           +KL++ YR MRG
Sbjct: 697 VKLYVNYRFMRG 708


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 446,719
Number of Sequences: 2352
Number of extensions: 8049
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 47360208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)