Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0305
         (518 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42844-8|AAB53820.1|  400|Caenorhabditis elegans Hypothetical pr...    32   0.28 
Z70752-4|CAA94756.2|  363|Caenorhabditis elegans Hypothetical pr...    27   6.1  
U88172-6|AAB42261.1|  310|Caenorhabditis elegans Hypothetical pr...    27   6.1  
AF039047-3|AAB94222.1|  748|Caenorhabditis elegans Carnitine pal...    27   8.0  

>U42844-8|AAB53820.1|  400|Caenorhabditis elegans Hypothetical
           protein C08A9.8 protein.
          Length = 400

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = -1

Query: 215 GSQCKRKSIYENKNVKFK*IQLICYKLVYILFSIKLC---FVHSHGFLFSNHQEESL 54
           G+ CK    Y NK +K K ++L  Y   Y +FS K     F++ H F F  H+ ESL
Sbjct: 86  GNNCKHFIQYPNKQIKTKLLKLKSYSNKYKMFSRKKIYRKFLNIHCFKF--HKFESL 140


>Z70752-4|CAA94756.2|  363|Caenorhabditis elegans Hypothetical
           protein F25B3.4 protein.
          Length = 363

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -1

Query: 146 CYKLVYILFSIKLCFVHSHGFLFSNHQEESLFSRLFSIYHK 24
           C + + +LF+ K+ F  +H F+   + E SL +R +  Y +
Sbjct: 149 CLETILLLFAYKVIF-PNHFFMLRGNHECSLINRQYGFYEE 188


>U88172-6|AAB42261.1|  310|Caenorhabditis elegans Hypothetical
           protein ZK354.9 protein.
          Length = 310

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = -1

Query: 146 CYKLVYILFSIKLCFVHSHGFLFSNHQEESLFSRLFSIY 30
           C + + +LF+ K+ F  +H F+   + E SL ++++  Y
Sbjct: 84  CLETILLLFAYKVIF-PNHFFMLRGNHECSLINKIYGFY 121


>AF039047-3|AAB94222.1|  748|Caenorhabditis elegans Carnitine
           palmitoyl transferaseprotein 4 protein.
          Length = 748

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -1

Query: 143 YKLVYILFSIKLCFVHSH-GFLFSNHQEESLFSRLFSIYHKVIMS 12
           Y  ++IL  I   F  S+ G+LF N ++ S+ + ++ +  KV+++
Sbjct: 84  YTSIFILRHILKYFYFSYKGYLFENPKKPSIRTMIWGVLRKVLLT 128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,911,083
Number of Sequences: 27780
Number of extensions: 168519
Number of successful extensions: 339
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)