Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0305
         (518 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27090.1 68418.m03232 MADS-box family protein contains Pfam p...    29   2.5  
At5g25180.1 68418.m02985 cytochrome P450 71B14, putative (CYP71B...    27   5.7  
At5g25140.1 68418.m02979 cytochrome P450 family protein CYTOCHRO...    27   5.7  
At5g15620.1 68418.m01828 F-box family protein contains F-box dom...    27   5.7  
At1g14700.1 68414.m01757 purple acid phosphatase, putative conta...    27   5.7  
At5g27070.1 68418.m03230 MADS-box family protein contains Pfam p...    27   7.6  
At5g26950.1 68418.m03216 MADS-box family protein contains simila...    27   7.6  
At5g25120.1 68418.m02976 cytochrome P450 family protein CYTOCHRO...    27   7.6  

>At5g27090.1 68418.m03232 MADS-box family protein contains Pfam
           profile PF00319: SRF-type transcription factor
           (DNA-binding and dimerisation domain); MADS-box protein
           AGL54
          Length = 187

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -1

Query: 287 SKVNYRSNGRSKPHEQDRCKSQMKGSQCKRKSIYENKNVKFK*IQL 150
           SKV   +   S+ HE++RCK +   S   RK I  +K +  K +++
Sbjct: 79  SKVRDMAERFSRLHERERCKKRTNLSLFLRKQILHDKKLSEKVLEM 124


>At5g25180.1 68418.m02985 cytochrome P450 71B14, putative (CYP71B14)
           Identical to cytochrome P450 71B14 (SP:P58051)
           [Arabidopsis thaliana]; cytochrome P450 71B1, Thlaspi
           arvense, SWISSPROT:C7B1_THLAR; similar to cytochrome
           P450 CYP83D1p (GIi:2739002) [Glycine max]
          Length = 496

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 331 MSLIIITLIDFIYRFTMKREGNY*INDIKLFIRYRLM 441
           M+L+ +TLI+ +YRF  K      I D+ L   Y L+
Sbjct: 443 MALVHLTLINLLYRFDWKLPEGMNIEDVDLEESYGLV 479


>At5g25140.1 68418.m02979 cytochrome P450 family protein CYTOCHROME
           P450 71B1 - Thlaspi arvense, EMBL:L24438
          Length = 496

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 331 MSLIIITLIDFIYRFTMKREGNY*INDIKLFIRYRLM 441
           M+LI +TLI+ +YRF  K      + D+ L   Y L+
Sbjct: 443 MALIHLTLINLLYRFDWKLPEGMEVEDVDLEESYGLV 479


>At5g15620.1 68418.m01828 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 440

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 451 YISKKDLIFYTYPII*VNSLV 513
           Y+  KD+I Y YPI+ +NS+V
Sbjct: 230 YLKYKDVIPYGYPIVNLNSIV 250


>At1g14700.1 68414.m01757 purple acid phosphatase, putative contains
           Pfam profile: PF00149 calcineurin-like phosphoesterase;
           similar to purple acid phosphatase (GI:20257479)
           [Arabidopsis thaliana]
          Length = 366

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3

Query: 426 NKKFYVINLIISFALHSETVD 364
           N  FYV NLII F+ HS T +
Sbjct: 40  NLVFYVYNLIIIFSSHSSTAE 60


>At5g27070.1 68418.m03230 MADS-box family protein contains Pfam
           profile PF00319: SRF-type transcription factor
           (DNA-binding and dimerisation domain); MADS-box protein
           AGL53
          Length = 287

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -1

Query: 287 SKVNYRSNGRSKPHEQDRCKSQMKGSQCKRKSIYENKNVKFK*IQL 150
           SKV   +   S+ HE++RCK +   S   RK I ++  +  K +++
Sbjct: 80  SKVRDMAERFSRLHERERCKKRTNLSLFLRKKILDDTKLSEKVLEM 125


>At5g26950.1 68418.m03216 MADS-box family protein contains
           similarity to hypothetical proteins of [Arabidopsis
           thaliana]; contains Pfam profile PF00319: SRF-type
           transcription factor (DNA-binding and dimerisation
           domain); MADS-box protein AGL93
          Length = 289

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -1

Query: 287 SKVNYRSNGRSKPHEQDRCKSQMKGSQCKRKSIYENKNVKFK*IQL 150
           SKV   +   S+ HE++RCK +   S   RK I ++  +  K +++
Sbjct: 80  SKVRDMAERFSRLHERERCKKRTNLSLFLRKKILDDTKLSEKVLEM 125


>At5g25120.1 68418.m02976 cytochrome P450 family protein CYTOCHROME
           P450 71B1 - Thlaspi arvense, EMBL:L24438
          Length = 496

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 331 MSLIIITLIDFIYRFTMKREGNY*INDIKLFIRYRLM 441
           M+L+ +TLI+ +YRF  K      + D+ L   Y L+
Sbjct: 443 MALVHLTLINLLYRFDWKLPEGMEVEDVDLEESYGLV 479


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,954,125
Number of Sequences: 28952
Number of extensions: 144574
Number of successful extensions: 261
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)