Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0304
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    28   0.97 
SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase Gpd1|Schizo...    27   1.7  
SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac...    27   2.3  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    27   3.0  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    25   6.9  
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom...    25   6.9  
SPAC13A11.03 |mcp7|mug32|meiosis specific coiled-coil protein Mc...    25   9.1  

>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = -2

Query: 260 DYLSIESGFSAINIWVNLLSPCAMGKLATRALFSFTFNRLFSSDSTDS 117
           D L  E    A   W+    PC  GK   +   S  FN  F++ ++DS
Sbjct: 364 DLLGDERVHRAAMHWIKAWDPCVFGKSRLQPSKSMRFNPRFTNITSDS 411


>SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase
           Gpd1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 385

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -2

Query: 389 KVCG--AARHGHIAKCAGRVW*FNSIVVYGAQKNAVSAHF 276
           K+CG  A  HGH  +   R+W F   + Y  +K  ++  F
Sbjct: 39  KICGENARAHGHHFRSKVRMWVFEEEIEYKGEKRKLTEVF 78


>SPCC4G3.08 |psk1||serine/threonine protein kinase
           Psk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 436

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 509 VDQAHNHAVDFESQHTIVFYSFSGGYTFENNKH 411
           ++Q ++HAVD+ S   ++F   +G   F  N H
Sbjct: 262 LEQPYDHAVDWWSMGILIFDLLTGSPPFTANNH 294


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -2

Query: 257 YLSIESGFSAINIWVNLLS--PCAMGKLATRALFSF 156
           YL  ++  S + +++N L   PC MGKL  R + ++
Sbjct: 523 YLDSKNATSLLALYINALKVFPCLMGKLEQRVIDAY 558


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
            subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -2

Query: 314  VYGAQKNAVSAHFVGALFDYLSIESGFSAIN 222
            V+G    AV    +  + DY++ E G+ A N
Sbjct: 1592 VFGVYGIAVDPRHLSLIADYMTFEGGYKAFN 1622


>SPBC2F12.13 |klp5|sot1|kinesin-like protein
           Klp5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 883

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +1

Query: 97  PSLGQSSESVESDENKRLNVKLNNARVANLPIAHG-DNKLTQMFIAEKPLSIDK*SKRAP 273
           P++   SES + +     +  +N  RV + P     +N L +MF  + P      SKR+P
Sbjct: 631 PNISVLSESYKLNSTSDDSRTINRDRVHSFPTQPLLNNNLPRMFFVKSPKKPVVFSKRSP 690

Query: 274 TK 279
            K
Sbjct: 691 KK 692


>SPAC13A11.03 |mcp7|mug32|meiosis specific coiled-coil protein
           Mcp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 581 CTPKVQLDLRNSGTSRLDKRAPRWVDQAH 495
           C P+   +L+N  T +  + A  W DQ H
Sbjct: 149 CNPET-FELKNENTKKYMEAANLWTDQIH 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,767,772
Number of Sequences: 5004
Number of extensions: 59247
Number of successful extensions: 165
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)