Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0304
(633 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0756 - 5612722-5613906 30 1.3
12_02_1228 - 27190983-27191291,27191442-27191675,27191994-271922... 30 1.8
09_02_0060 + 3729613-3729863,3730377-3730392 29 2.3
02_05_0642 + 30576158-30576289,30576436-30576503,30577167-305774... 29 3.1
10_08_1063 - 22628642-22628716,22628806-22629012,22629325-226294... 29 4.1
06_03_1402 - 29906706-29907047,29919049-29919485,29919622-299199... 29 4.1
03_05_0512 + 25069175-25070533,25072177-25072226,25072308-25072401 29 4.1
03_05_0650 - 26423829-26424179,26424379-26424612,26424961-264252... 28 5.4
06_03_0191 - 17720512-17721435,17721718-17721843,17721940-177221... 28 7.1
02_03_0361 - 18125504-18126250,18126381-18126543,18126713-18126942 28 7.1
12_02_1085 - 25935688-25935948,25936589-25936657,25937244-259373... 27 9.4
07_03_1011 + 23292086-23292149,23292407-23293663,23294312-232943... 27 9.4
03_01_0328 + 2553850-2553902,2553990-2554050,2554163-2554321 27 9.4
>02_01_0756 - 5612722-5613906
Length = 394
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/33 (33%), Positives = 23/33 (69%)
Frame = +3
Query: 408 SMFIVFKGITPTKTVKNNGMLRFKVHSMIVCLI 506
S+ + FKG+ P+ ++ ++ ++ FKVH +IV +
Sbjct: 349 SIDLGFKGLVPSSSLPSSSIISFKVHLLIVLFL 381
>12_02_1228 -
27190983-27191291,27191442-27191675,27191994-27192269,
27192420-27192696,27192985-27193283,27193341-27193454,
27193909-27194118,27194567-27194699,27194941-27195221
Length = 710
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/68 (25%), Positives = 31/68 (45%)
Frame = -3
Query: 490 MLWTLNRNIPLFFTVLVGVIPLKTINMDLNSLISKFAVPRVMVTLLNVLAAFGDLTP*LY 311
+ W + N +F VL +I L + + + + F +P +++TLL L P
Sbjct: 544 LYWPIAHNAVIFSLVLTQIICLGVFGLKESPVAAGFTIPLIILTLLFNQYCRNRLLPLFR 603
Query: 310 TVPRKMLL 287
T P + L+
Sbjct: 604 TTPAQDLI 611
>09_02_0060 + 3729613-3729863,3730377-3730392
Length = 88
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 187 ANWPPGRYSALRLIVCSRLIPPIRC 113
A WPP RY + R C R +P + C
Sbjct: 35 AKWPPSRYRSYR-ATCCRAVPSLLC 58
>02_05_0642 +
30576158-30576289,30576436-30576503,30577167-30577487,
30578318-30579146
Length = 449
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -3
Query: 166 YSALRLIVCSRLIPPIRC-SALNWATPRLR 80
Y L CS +PP+RC L W+ PR++
Sbjct: 15 YPLLAPPTCSSRLPPLRCFVGLRWSAPRIQ 44
>10_08_1063 -
22628642-22628716,22628806-22629012,22629325-22629433,
22629547-22629657,22630466-22630513,22630636-22630713,
22632151-22632254,22632360-22632470,22632555-22632791
Length = 359
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/66 (25%), Positives = 30/66 (45%)
Frame = +1
Query: 58 TNALNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLPIAHGDNKLTQMFIAEK 237
T N+ L + SP+ S+ +E D KR+ L I +G + + +E+
Sbjct: 154 TGLHNIVHLPQKSPAFDLLSKMLEYDPRKRITAAQALEHEIRLVILNGGSMIYYSNPSEQ 213
Query: 238 PLSIDK 255
P S+D+
Sbjct: 214 PFSVDR 219
>06_03_1402 -
29906706-29907047,29919049-29919485,29919622-29919901,
29921956-29922068,29922290-29922320
Length = 400
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = -3
Query: 508 SIKHTIMLWTLNRNIPLFFTVLVGVIPLKTINMDLN 401
S+K TI+ LN+ + FTVL +P+K +++DL+
Sbjct: 245 SVKATIVFLELNQ-LDHVFTVLPSALPVKELSLDLH 279
>03_05_0512 + 25069175-25070533,25072177-25072226,25072308-25072401
Length = 500
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +2
Query: 488 HDCVLDRPNAGPVCPNERCPNCANPTALLVYTKN 589
HDC D+P AG C C+ P A+ + ++
Sbjct: 5 HDCDPDQPPAGAAAGASPCSCCSTPCAVATWRRS 38
>03_05_0650 -
26423829-26424179,26424379-26424612,26424961-26425236,
26425372-26425648,26425751-26425764,26425843-26425989,
26426306-26426366,26426570-26426604,26426688-26426882,
26428230-26428439,26428865-26428940,26429519-26429799
Length = 718
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/68 (25%), Positives = 31/68 (45%)
Frame = -3
Query: 490 MLWTLNRNIPLFFTVLVGVIPLKTINMDLNSLISKFAVPRVMVTLLNVLAAFGDLTP*LY 311
+ W + +F VL +I L + + + + F VP +++TLL L P
Sbjct: 538 LYWPIAHYTTIFSIVLTQIICLGVFGLKESPVAAGFTVPLIILTLLFNQYCSNRLRPLFK 597
Query: 310 TVPRKMLL 287
T+P + L+
Sbjct: 598 TLPAQDLI 605
>06_03_0191 - 17720512-17721435,17721718-17721843,17721940-17722140,
17722189-17722332,17722415-17722722,17723433-17723568,
17723748-17723841,17723976-17724073,17724951-17725004,
17725704-17726150,17726227-17726393,17726540-17726663,
17726751-17726837,17727000-17727056,17727492-17727560,
17727664-17727811,17727893-17728116,17728842-17728958,
17729649-17729742,17730573-17730640,17733278-17733334,
17733412-17733511,17733638-17733674,17734077-17734200,
17735254-17735322,17735371-17735410,17735905-17735993,
17736849-17736953,17737033-17737104,17737814-17737936,
17738049-17738117,17738966-17739059,17739145-17739231,
17740184-17740351,17740436-17740552,17741484-17741590,
17741671-17741803,17742564-17742667,17743504-17743629,
17744148-17744216,17744996-17745064,17745278-17745358,
17745444-17745533,17745896-17746000,17747803-17747873,
17748320-17748461,17749266-17749330,17750081-17750168,
17750236-17750325,17750437-17750673,17751064-17751170,
17751625-17751832,17752376-17752546
Length = 2366
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 27 CFARTDLSLLDECIKFKFLNRGVAQ 101
C ++ +S++DEC+K FL +AQ
Sbjct: 1964 CSSKDSVSVIDECLKLLFLFHSLAQ 1988
>02_03_0361 - 18125504-18126250,18126381-18126543,18126713-18126942
Length = 379
Score = 27.9 bits (59), Expect = 7.1
Identities = 27/83 (32%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Frame = -2
Query: 590 RFWCTPKVQLDLRNSGTSRLDKRAPRWVDQAHNHAV------DFESQHTIVFYSFSGGYT 429
RF K L L + S + RA W D AH V + E+ + + F Y
Sbjct: 80 RFRELGKHGLVLARASPSAVAVRAAAWCDDAHRFLVRCAEAGNVEASYLLGMIMF---YC 136
Query: 428 FENNKHGFKFLDIKVCGAARHGH 360
FEN K G + L AAR GH
Sbjct: 137 FENRKLGAELLG----AAARRGH 155
>12_02_1085 -
25935688-25935948,25936589-25936657,25937244-25937315,
25937693-25937791,25937927-25938007,25938099-25938586,
25938728-25938857,25939994-25940239
Length = 481
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +1
Query: 88 EASPSLGQSSESVESDENKRLNVKLNNARVANLP 189
EASPS S+SV DE KR+ L + V +P
Sbjct: 238 EASPSKVVKSDSVSLDEMKRIMDGLTHYEVLGIP 271
>07_03_1011 +
23292086-23292149,23292407-23293663,23294312-23294316,
23294566-23294593,23294664-23294724,23295205-23295259
Length = 489
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/49 (26%), Positives = 20/49 (40%)
Frame = +3
Query: 315 NYGVKSPNAASTFSNVTMTRGTANFDIKEFKSMFIVFKGITPTKTVKNN 461
N+G+ PNA + +S T N D + F V P +K +
Sbjct: 330 NWGIMFPNATTVYSLTFEDMATTNTDSPVLRGTFCVANSSAPHSALKQS 378
>03_01_0328 + 2553850-2553902,2553990-2554050,2554163-2554321
Length = 90
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +2
Query: 224 LLPKNRFL*TNSQR--GLQQSGH*QHFSGHR 310
LLPKNR L N R G+QQS H++ HR
Sbjct: 29 LLPKNRLLSENEWRAIGVQQSRGWVHYAIHR 59
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,748,679
Number of Sequences: 37544
Number of extensions: 382944
Number of successful extensions: 1029
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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