Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0304
         (633 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58832| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_52216| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_29966| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_58832| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 364

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = -3

Query: 523 GPRVGSIKHTIMLWTLNRNIPLFFTVLVGVIPLKTINMDLNSLISKFAVPRVMVTLLNVL 344
           G RV   +H    WT+   I LFF +    + + +IN+ LN+  +K    R +   + ++
Sbjct: 209 GRRVEEARHRKTAWTIGIVITLFFFLWFPSLVIASINLTLNAGCTKKLFAREVWLWVELV 268

Query: 343 A-AFGDLTP*LYTV 305
           A +   + P +Y++
Sbjct: 269 AYSSSSINPWVYSM 282


>SB_52216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 979

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 17/51 (33%), Positives = 20/51 (39%)
 Frame = +2

Query: 416  YCFQRYNPH*NCKKQWYVAIQSPQHDCVLDRPNAGPVCPNERCPNCANPTA 568
            YC   Y+P  NC K +      P      +RP A   CP    P    PTA
Sbjct: 924  YCLTAYHPTANCTKAYCPTAYCP----TANRPTA--YCPTAYLPTAYCPTA 968


>SB_29966| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 449 SFSGGYTFENNKHGFKFLDIKVCGAARHGH 360
           +FSG + F + K GF  +D K+  A  HG+
Sbjct: 49  NFSGMFFFADFKKGFDLIDHKILLAKLHGY 78


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,704,563
Number of Sequences: 59808
Number of extensions: 448596
Number of successful extensions: 1036
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)