Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0304
(633 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40940-3|AAN39667.1| 455|Caenorhabditis elegans Nuclear hormone... 31 0.69
U40940-2|AAM69090.1| 434|Caenorhabditis elegans Nuclear hormone... 31 0.69
U40940-1|AAM69089.1| 439|Caenorhabditis elegans Nuclear hormone... 31 0.69
AF273782-1|AAG15131.1| 439|Caenorhabditis elegans nuclear recep... 31 0.69
U39741-2|AAQ81278.1| 279|Caenorhabditis elegans Hypothetical pr... 30 1.6
U39741-1|AAA80429.2| 301|Caenorhabditis elegans Hypothetical pr... 30 1.6
AC024798-2|AAK29923.1| 352|Caenorhabditis elegans Hypothetical ... 28 4.8
Z75542-4|CAA99861.1| 424|Caenorhabditis elegans Hypothetical pr... 28 6.4
EF601082-1|ABQ96204.1| 370|Caenorhabditis elegans UNC-55a isofo... 28 6.4
EF601077-1|ABQ96199.1| 357|Caenorhabditis elegans UNC-55b isofo... 28 6.4
Z93390-6|CAB07675.4| 816|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z93390-1|CAE46674.1| 540|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z80214-7|CAC42261.2| 816|Caenorhabditis elegans Hypothetical pr... 27 8.4
>U40940-3|AAN39667.1| 455|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 40, isoform c protein.
Length = 455
Score = 31.1 bits (67), Expect = 0.69
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = -2
Query: 266 LFDYLSIESGFSAINIWVNLLSPCA-MGKLATRALFSFTFNRLF--SSDSTDSLL 111
LF YLS E G A I+ NLL A + K A+ F FN +F ++D D L+
Sbjct: 397 LFSYLSTERGKEAQTIFSNLLMMSATLSKTASFIKRVFDFNHIFNRTNDLIDQLI 451
>U40940-2|AAM69090.1| 434|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 40, isoform b protein.
Length = 434
Score = 31.1 bits (67), Expect = 0.69
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = -2
Query: 266 LFDYLSIESGFSAINIWVNLLSPCA-MGKLATRALFSFTFNRLF--SSDSTDSLL 111
LF YLS E G A I+ NLL A + K A+ F FN +F ++D D L+
Sbjct: 376 LFSYLSTERGKEAQTIFSNLLMMSATLSKTASFIKRVFDFNHIFNRTNDLIDQLI 430
>U40940-1|AAM69089.1| 439|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 40, isoform a protein.
Length = 439
Score = 31.1 bits (67), Expect = 0.69
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = -2
Query: 266 LFDYLSIESGFSAINIWVNLLSPCA-MGKLATRALFSFTFNRLF--SSDSTDSLL 111
LF YLS E G A I+ NLL A + K A+ F FN +F ++D D L+
Sbjct: 381 LFSYLSTERGKEAQTIFSNLLMMSATLSKTASFIKRVFDFNHIFNRTNDLIDQLI 435
>AF273782-1|AAG15131.1| 439|Caenorhabditis elegans nuclear receptor
NHR-40 protein.
Length = 439
Score = 31.1 bits (67), Expect = 0.69
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = -2
Query: 266 LFDYLSIESGFSAINIWVNLLSPCA-MGKLATRALFSFTFNRLF--SSDSTDSLL 111
LF YLS E G A I+ NLL A + K A+ F FN +F ++D D L+
Sbjct: 381 LFSYLSTERGKEAQTIFSNLLMMSATLSKTASFIKRVFDFNHIFNRTNDLIDQLI 435
>U39741-2|AAQ81278.1| 279|Caenorhabditis elegans Hypothetical
protein F12D9.1b protein.
Length = 279
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 489 MIVCLIDPTRGPFVQTRGARIA-QIQLHFWCT 581
M+VC++D P +T +R A QIQL+ W T
Sbjct: 225 MVVCVVDDELAPTNETECSRRAKQIQLYIWTT 256
>U39741-1|AAA80429.2| 301|Caenorhabditis elegans Hypothetical
protein F12D9.1a protein.
Length = 301
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 489 MIVCLIDPTRGPFVQTRGARIA-QIQLHFWCT 581
M+VC++D P +T +R A QIQL+ W T
Sbjct: 247 MVVCVVDDELAPTNETECSRRAKQIQLYIWTT 278
>AC024798-2|AAK29923.1| 352|Caenorhabditis elegans Hypothetical
protein Y48G9A.9a protein.
Length = 352
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +1
Query: 70 NLNSLTEASPSLGQSSESVESDENKRLNVK-LNNARVA 180
N N++ E P+ QSS E+D++ R V+ LNN +A
Sbjct: 17 NNNNVNEKRPASAQSSNGTETDDHHRKYVETLNNFIIA 54
>Z75542-4|CAA99861.1| 424|Caenorhabditis elegans Hypothetical
protein F55D12.4 protein.
Length = 424
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = -3
Query: 517 RVGSIKHTIMLWTLNRNIP---LFFTVLVGVIPLKTINMDL 404
R I + L RN+P LFF+ L+G PL+TI DL
Sbjct: 365 RYHQICECLQLLKSTRNLPISRLFFSRLLGTTPLETILSDL 405
>EF601082-1|ABQ96204.1| 370|Caenorhabditis elegans UNC-55a isoform
protein.
Length = 370
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = -3
Query: 517 RVGSIKHTIMLWTLNRNIP---LFFTVLVGVIPLKTINMDL 404
R I + L RN+P LFF+ L+G PL+TI DL
Sbjct: 311 RYHQICECLQLLKSTRNLPISRLFFSRLLGTTPLETILSDL 351
>EF601077-1|ABQ96199.1| 357|Caenorhabditis elegans UNC-55b isoform
protein.
Length = 357
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = -3
Query: 517 RVGSIKHTIMLWTLNRNIP---LFFTVLVGVIPLKTINMDL 404
R I + L RN+P LFF+ L+G PL+TI DL
Sbjct: 298 RYHQICECLQLLKSTRNLPISRLFFSRLLGTTPLETILSDL 338
>Z93390-6|CAB07675.4| 816|Caenorhabditis elegans Hypothetical
protein T23B5.3a protein.
Length = 816
Score = 27.5 bits (58), Expect = 8.4
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = +1
Query: 58 TNALNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLPIAHGDNKLTQMFIAEK 237
TNA LN++T ++ S SSES S + + K + A+ + H + + T + +
Sbjct: 163 TNATILNAMTASTSSNDSSSESGVSGVKEAKDEKKKSKIQADEKLRHEERQSTSDYTDDD 222
Query: 238 PL 243
P+
Sbjct: 223 PI 224
>Z93390-1|CAE46674.1| 540|Caenorhabditis elegans Hypothetical
protein T23B5.3b protein.
Length = 540
Score = 27.5 bits (58), Expect = 8.4
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = +1
Query: 58 TNALNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLPIAHGDNKLTQMFIAEK 237
TNA LN++T ++ S SSES S + + K + A+ + H + + T + +
Sbjct: 163 TNATILNAMTASTSSNDSSSESGVSGVKEAKDEKKKSKIQADEKLRHEERQSTSDYTDDD 222
Query: 238 PL 243
P+
Sbjct: 223 PI 224
>Z80214-7|CAC42261.2| 816|Caenorhabditis elegans Hypothetical
protein T23B5.3a protein.
Length = 816
Score = 27.5 bits (58), Expect = 8.4
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = +1
Query: 58 TNALNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLPIAHGDNKLTQMFIAEK 237
TNA LN++T ++ S SSES S + + K + A+ + H + + T + +
Sbjct: 163 TNATILNAMTASTSSNDSSSESGVSGVKEAKDEKKKSKIQADEKLRHEERQSTSDYTDDD 222
Query: 238 PL 243
P+
Sbjct: 223 PI 224
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,406,855
Number of Sequences: 27780
Number of extensions: 335669
Number of successful extensions: 992
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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