Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0304
(633 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g30260.1 68414.m03701 expressed protein 34 0.068
At2g19620.1 68415.m02292 Ndr family protein similar to SP|O23969... 31 0.84
At5g04390.1 68418.m00431 zinc finger (C2H2 type) family protein ... 29 2.6
At5g23890.1 68418.m02806 expressed protein weak similarity to SP... 29 3.4
At5g13550.1 68418.m01565 sulfate transporter family protein simi... 29 3.4
At1g80960.3 68414.m09501 F-box protein-related contains weak hit... 28 4.5
At1g80960.2 68414.m09500 F-box protein-related contains weak hit... 28 4.5
At1g80960.1 68414.m09499 F-box protein-related contains weak hit... 28 4.5
At3g55990.1 68416.m06221 expressed protein contains Pfam profile... 28 5.9
At3g46880.1 68416.m05088 expressed protein ; expression support... 28 5.9
At2g27960.1 68415.m03389 cyclin-dependent kinase / CDK (CKS1) id... 28 5.9
At5g45470.1 68418.m05586 expressed protein contains Pfam domain,... 27 7.8
At2g28310.2 68415.m03438 expressed protein contains Pfam profile... 27 7.8
At2g28310.1 68415.m03437 expressed protein contains Pfam profile... 27 7.8
At1g16970.1 68414.m02061 Ku70-like protein identical to Ku70-lik... 27 7.8
>At1g30260.1 68414.m03701 expressed protein
Length = 97
Score = 34.3 bits (75), Expect = 0.068
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Frame = +3
Query: 231 RKTAFYRQIVKEGSNKVGTNSIFLGTVYNYGVKSP-------NAASTFSNVTMTRGTANF 389
R+TA +KE +VGT+SIF + + + SP + +S ++ + T G F
Sbjct: 24 RRTAKVLDTIKEEEREVGTDSIFPSSFNSKKISSPFTSPYSSSVSSASASASCTSGLNKF 83
Query: 390 DIKEFKSMFIVFK 428
+ E + F VFK
Sbjct: 84 PVTENRGSFPVFK 96
>At2g19620.1 68415.m02292 Ndr family protein similar to SP|O23969
Pollen specific protein SF21 {Helianthus annuus};
contains Pfam profile PF03096: Ndr family
Length = 347
Score = 30.7 bits (66), Expect = 0.84
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = -2
Query: 398 LDIK-VCGAARHGHIAKCAGRVW*FNSIVVYGAQKNAVSAHFVGALFDYLSIESGFSAIN 222
LDI+ +C + H+ C G V S+VVYG Q+ + +Y+S G
Sbjct: 10 LDIEEICNGGKEHHVKTCHGSV----SVVVYGDQEKPALITYPDVALNYMSCFQGLFLCP 65
Query: 221 IWVNLL 204
V+LL
Sbjct: 66 EAVSLL 71
>At5g04390.1 68418.m00431 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 362
Score = 29.1 bits (62), Expect = 2.6
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +3
Query: 327 KSPNAASTFSNVTMTRGT-ANFDIKEFKSMFIVFKGITPTKTVKNNGMLRFKVHSMIVCL 503
K P AAS +SN+ + + T AN + + VFK V + KVH +C
Sbjct: 176 KKPKAASFYSNLDLKKNTYANDAVSLVHTTTTVFKNNNSRSLVVYGKASKNKVHECGICG 235
Query: 504 IDPTRG 521
+ T G
Sbjct: 236 AEFTSG 241
>At5g23890.1 68418.m02806 expressed protein weak similarity to
SP|P12957 Caldesmon (CDM) {Gallus gallus}
Length = 946
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +1
Query: 58 TNALNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLPIAHGD 204
T ++SLT S+ QSS+ + SDE K N + +N + + I D
Sbjct: 120 TKKQEMHSLTSQQESMIQSSDEISSDEIKVANSEESNLKDEDKSIESND 168
>At5g13550.1 68418.m01565 sulfate transporter family protein similar
to sulfate transporter [Arabidopsis thaliana]
GI:3777483; contains Pfam profiles PF00916: Sulfate
transporter family, PF01740: STAS domain
Length = 685
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -3
Query: 502 KHTIMLWTLNRNIPLFFTVLVGVIPLKTINMDLNSLISKFAVPRVMV 362
K LWT+ I LFF + +GV L + L +I + A P + V
Sbjct: 459 KRDFSLWTITSTITLFFGIEIGV--LVGVGFSLAFVIHESANPHIAV 503
>At1g80960.3 68414.m09501 F-box protein-related contains weak hit to
Pfam PF00646: F-box domain
Length = 462
Score = 28.3 bits (60), Expect = 4.5
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = -2
Query: 281 HFVGALFDYLSIESGFSAINIWVNLLSPCAMGKLATRALFSFTFNRLFS--SDSTDSLLC 108
H + ++ + G +N W+ LLS K+ T T++R F + S DSL
Sbjct: 127 HLESCVIIHVPYQGGNGMLNSWIRLLSCVKRTKVLTLRYHYGTWDRKFKTFNFSPDSLSH 186
Query: 107 PKLGDASVKEF 75
P L S+ +
Sbjct: 187 PSLMSLSLHSY 197
>At1g80960.2 68414.m09500 F-box protein-related contains weak hit to
Pfam PF00646: F-box domain
Length = 486
Score = 28.3 bits (60), Expect = 4.5
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = -2
Query: 281 HFVGALFDYLSIESGFSAINIWVNLLSPCAMGKLATRALFSFTFNRLFS--SDSTDSLLC 108
H + ++ + G +N W+ LLS K+ T T++R F + S DSL
Sbjct: 127 HLESCVIIHVPYQGGNGMLNSWIRLLSCVKRTKVLTLRYHYGTWDRKFKTFNFSPDSLSH 186
Query: 107 PKLGDASVKEF 75
P L S+ +
Sbjct: 187 PSLMSLSLHSY 197
>At1g80960.1 68414.m09499 F-box protein-related contains weak hit to
Pfam PF00646: F-box domain
Length = 486
Score = 28.3 bits (60), Expect = 4.5
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = -2
Query: 281 HFVGALFDYLSIESGFSAINIWVNLLSPCAMGKLATRALFSFTFNRLFS--SDSTDSLLC 108
H + ++ + G +N W+ LLS K+ T T++R F + S DSL
Sbjct: 127 HLESCVIIHVPYQGGNGMLNSWIRLLSCVKRTKVLTLRYHYGTWDRKFKTFNFSPDSLSH 186
Query: 107 PKLGDASVKEF 75
P L S+ +
Sbjct: 187 PSLMSLSLHSY 197
>At3g55990.1 68416.m06221 expressed protein contains Pfam profile
PF03005: Arabidopsis proteins of unknown function
Length = 487
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Frame = -3
Query: 211 IYYRRVR--WANWPPGRYSALRLIVCSRLIPPIRCSALNWATP 89
+ YRRV W +W LR V + P+ +L+W P
Sbjct: 337 VAYRRVMRTWGDWVERNIDPLRTTVFFASMSPLHIKSLDWENP 379
>At3g46880.1 68416.m05088 expressed protein ; expression supported
by MPSS
Length = 153
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/41 (31%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +3
Query: 264 EGSNKVGTNSIFLGTVYNYGVKSPNAASTFSNV-TMTRGTA 383
EG +VG++S T +G K P++++ F+++ ++GTA
Sbjct: 2 EGKGRVGSSSSSSFTAQLFGPKEPSSSANFNSIFPPSKGTA 42
>At2g27960.1 68415.m03389 cyclin-dependent kinase / CDK (CKS1)
identical to Cks1 protein [Arabidopsis thaliana]
gi|2274859|emb|CAA03859
Length = 87
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +2
Query: 224 LLPKNRFL*TNSQR--GLQQSGH*QHFSGHR 310
LLPKNR L N R G+QQS H++ HR
Sbjct: 29 LLPKNRLLSENEWRAIGVQQSRGWVHYAVHR 59
>At5g45470.1 68418.m05586 expressed protein contains Pfam domain,
PF04578: Protein of unknown function, DUF594
Length = 866
Score = 27.5 bits (58), Expect = 7.8
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 577 VHQKRGSLTRFIWKINFFP 633
+H RGS R+ WKI FP
Sbjct: 493 IHDARGSFRRYSWKIITFP 511
>At2g28310.2 68415.m03438 expressed protein contains Pfam profile
PF05212: Protein of unknown function (DUF707)
Length = 374
Score = 27.5 bits (58), Expect = 7.8
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = -3
Query: 475 NRNIPLFFTVLVGVIPLKTINMDLNSLISKFAVPRVMVTLLNVLAAFGDLTP 320
N N + T ++G++ I + L SL K +P +++ L+V A GD +P
Sbjct: 14 NENAKVIITTILGIVFGTFIGITLPSLSFKINLPSRLISSLDV-AISGDKSP 64
>At2g28310.1 68415.m03437 expressed protein contains Pfam profile
PF05212: Protein of unknown function (DUF707)
Length = 374
Score = 27.5 bits (58), Expect = 7.8
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = -3
Query: 475 NRNIPLFFTVLVGVIPLKTINMDLNSLISKFAVPRVMVTLLNVLAAFGDLTP 320
N N + T ++G++ I + L SL K +P +++ L+V A GD +P
Sbjct: 14 NENAKVIITTILGIVFGTFIGITLPSLSFKINLPSRLISSLDV-AISGDKSP 64
>At1g16970.1 68414.m02061 Ku70-like protein identical to Ku70-like
protein GI:12006424 from [Arabidopsis thaliana];
contains Pfam profiles PF03731: Ku70/Ku80 N-terminal
alpha/beta domain, PF02735: Ku70/Ku80 beta-barrel
domain, PF03730: Ku70/Ku80 C-terminal arm, and PF02037:
SAP domain; contains TIGRfam profile TIGR00578:
ATP-dependent DNA helicase ii, 70 kDa subunit
Length = 621
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 67 LNLNSLTEASPSLGQSSESVESDENKRLNVK 159
LN + LTE PS+GQ E ++ KR+ K
Sbjct: 234 LNSDELTEFMPSVGQKLEDMKDQLKKRVLAK 264
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,456,443
Number of Sequences: 28952
Number of extensions: 312534
Number of successful extensions: 872
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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