Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0303
         (606 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   4.6  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    21   6.1  
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    21   6.1  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   8.1  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 11/42 (26%), Positives = 17/42 (40%)
 Frame = +1

Query: 130  EYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKA 255
            EYPKC+ V  +       +     +R  S     KN ++  A
Sbjct: 2443 EYPKCWQVDCNKGPDSDKEAFAAFVRELSAAFKPKNLLLSAA 2484


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 97  NYFVKIIQLLDEYPKCF 147
           N   KI  L+DE+ +CF
Sbjct: 214 NLHNKICNLIDEFNECF 230


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory
          receptor candidate 1 protein.
          Length = 373

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 4  SRAFCLVLKFHRSPYATLSR 63
          S  FCLV   HR  Y  LS+
Sbjct: 20 SEIFCLVNFNHRESYFRLSK 39


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
 Frame = +2

Query: 263 PPGQ---QSSPRGGARYPIRPIVSRITIHWPSFYN 358
           PP Q   Q +P        +P+ +   + +PS+YN
Sbjct: 332 PPYQISAQPTPSQSPNQIYQPVTNLTNLTYPSYYN 366


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,257
Number of Sequences: 336
Number of extensions: 3400
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15352827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)