Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0303
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...    62   5e-11
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    28   0.92 
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    27   2.1  
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb...    25   8.6  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score = 62.5 bits (145), Expect = 5e-11
 Identities = 27/57 (47%), Positives = 40/57 (70%)
 Frame = +1

Query: 91  KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKASK 261
           K+ YF K+  L ++Y   F+V  DNV SQQM  +R  LRG++ ++MGKNTM+R+A +
Sbjct: 8   KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMR 64


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 28.3 bits (60), Expect = 0.92
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
 Frame = +2

Query: 260 RP-PGQQSSPRGGARYPIR--PIVSRITIHWPSFYNVVTGKTLALPNLIALQ-----HIP 415
           RP P    SP G   +P+   P+ S ++ H   +    +    +L N I+L      ++P
Sbjct: 154 RPLPETPVSPGGSLVHPLPRPPLPSSVSSHSSPYSTTSSTSLYSLYNDISLSCSPEPYLP 213

Query: 416 LSPAGVIAKRPAPIAL 463
           LSP    A+ P+PI L
Sbjct: 214 LSPTRSPARTPSPIRL 229


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 377 LALPNLIALQHIPLSPAGVIAKRPAPIALPTVAQPEWR 490
           L+L  L +  + P+ P G  A R  P  +P +A+P +R
Sbjct: 310 LSLIPLSSSPNHPIQPIGFPASRKTPTYVPPIARPYFR 347


>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 22/91 (24%), Positives = 34/91 (37%)
 Frame = +1

Query: 139 KCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKASKTTWTTIQPSRGGPVXXXXX 318
           K  IVGA NVGS     + +S   + IV++  N    +          P           
Sbjct: 22  KIVIVGAGNVGSTTAFTLLLSGLAAEIVIIDLNKKKAEGEAMDLNHAAPLSHETRVYLGD 81

Query: 319 XXXXXXXLAVVLQRRDWENPGVTQLNRLAAH 411
                   AVV+     + PG T+++ L A+
Sbjct: 82  YKDCKDATAVVITAGKNQKPGETRMDLLKAN 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,669,466
Number of Sequences: 5004
Number of extensions: 54607
Number of successful extensions: 126
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)