Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0303
(606 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 73 2e-13
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 73 2e-13
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 73 2e-13
11_01_0033 - 251730-251855,252068-252144,252228-252318,252644-25... 33 0.18
12_01_0032 - 266954-267079,267204-267245,267290-267366,267450-26... 32 0.31
09_02_0036 + 3217163-3217584,3217752-3218322 30 1.2
06_03_0473 + 21190878-21191188,21191269-21192355,21192972-211931... 30 1.2
10_08_0302 - 16626622-16626624,16626809-16628761,16631452-16631655 30 1.6
06_01_0542 + 3877863-3878017,3878106-3878169,3878259-3878308,387... 29 2.2
06_01_0532 + 3839807-3839961,3840050-3840113,3840203-3840252,384... 29 2.2
03_02_0600 - 9748382-9748933,9749805-9749840,9751164-9751218,975... 29 3.8
05_07_0223 - 28496877-28497398 28 5.0
06_01_0092 - 775290-775691 28 6.6
11_06_0395 + 23088737-23088823,23090198-23090346,23090570-230907... 27 8.7
11_04_0129 - 13763651-13763911,13763978-13764327,13764448-137646... 27 8.7
05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225 27 8.7
04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420... 27 8.7
02_05_0634 + 30513920-30514136,30514674-30514717,30515547-305155... 27 8.7
01_05_0017 - 17199365-17199757,17200040-17200156 27 8.7
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 72.9 bits (171), Expect = 2e-13
Identities = 37/64 (57%), Positives = 44/64 (68%)
Frame = +1
Query: 70 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMR 249
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 250 KASK 261
+ K
Sbjct: 64 RCIK 67
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 72.9 bits (171), Expect = 2e-13
Identities = 37/64 (57%), Positives = 44/64 (68%)
Frame = +1
Query: 70 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMR 249
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 250 KASK 261
+ K
Sbjct: 64 RCIK 67
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 72.9 bits (171), Expect = 2e-13
Identities = 37/64 (57%), Positives = 44/64 (68%)
Frame = +1
Query: 70 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMR 249
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 250 KASK 261
+ K
Sbjct: 64 RCIK 67
>11_01_0033 -
251730-251855,252068-252144,252228-252318,252644-252704,
252800-252858,252955-253045,253238-253406,253760-253787
Length = 233
Score = 33.1 bits (72), Expect = 0.18
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +1
Query: 28 KFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLR 207
K R+ TLS+ ++ K I ++ Y ++ DN+ +Q+++ +R L+
Sbjct: 3 KSKRNRPVTLSKTKKKPGLERKGKVVTDIKDAVEHYANAYVFTYDNMRNQKLKDLREQLK 62
Query: 208 GSS-IVLMGKNTM 243
SS I L GK M
Sbjct: 63 SSSRIFLAGKKVM 75
>12_01_0032 -
266954-267079,267204-267245,267290-267366,267450-267540,
267864-267924,268021-268079,268176-268266,268481-268698,
268818-268824,269013-269148,270064-270307
Length = 383
Score = 32.3 bits (70), Expect = 0.31
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +1
Query: 40 SPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSS- 216
S TLS+ ++ K I ++ Y ++ DN+ +Q+++ +R L+ SS
Sbjct: 143 SSAVTLSKTKKKPGLERKGKVVTDIKDAVEHYANAYVFTYDNMRNQKLKDLREQLKSSSR 202
Query: 217 IVLMGKNTM 243
I L GK M
Sbjct: 203 IFLAGKKVM 211
>09_02_0036 + 3217163-3217584,3217752-3218322
Length = 330
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +2
Query: 329 ITIHWPSFYNVV-TGKTLALPNLIALQH 409
I+ W F N+V +G TL++PN + LQH
Sbjct: 69 ISAGWSRFINLVQSGPTLSIPNYVLLQH 96
>06_03_0473 + 21190878-21191188,21191269-21192355,21192972-21193194,
21193286-21193356,21193385-21193441,21193442-21194056,
21194168-21194237,21194470-21194745,21194916-21195130,
21195224-21195529,21195750-21195813,21195902-21196141,
21196306-21196415
Length = 1214
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/72 (20%), Positives = 29/72 (40%)
Frame = +2
Query: 263 PPGQQSSPRGGARYPIRPIVSRITIHWPSFYNVVTGKTLALPNLIALQHIPLSPAGVIAK 442
PPG S G ++ + + FY+ + +++ + H+P P +I +
Sbjct: 897 PPGAVSPGFAGLSLSFALSLTAVQVFLTKFYSYMENYIISVERIKQYMHLPPEPPAIIPE 956
Query: 443 RPAPIALPTVAQ 478
AP + P Q
Sbjct: 957 NRAPSSWPQEGQ 968
>10_08_0302 - 16626622-16626624,16626809-16628761,16631452-16631655
Length = 719
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/42 (47%), Positives = 24/42 (57%)
Frame = +2
Query: 413 PLSPAGVIAKRPAPIALPTVAQPEWRMANCKRNILLKFALNF 538
P SPA V ++ API L TV W MA K LLK A++F
Sbjct: 248 PSSPATVTSR--APIDLVTVLDVSWSMAGTKL-ALLKRAMSF 286
>06_01_0542 +
3877863-3878017,3878106-3878169,3878259-3878308,
3878393-3878583,3878767-3878827,3878959-3879031,
3879364-3879487,3879568-3879644,3880064-3880140,
3880748-3880819,3881313-3881425,3881518-3881522,
3881950-3882069
Length = 393
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -1
Query: 540 QKFNANFNKILRLQFAIRHSGCATVGRAIGAGLFAITPAGERG 412
+K + N K+L ++ +R+ GC +GR I +T A G
Sbjct: 68 EKSSGNLPKVLSVEDKLRNLGCIGIGRKIAEAEMDLTKAKSEG 110
>06_01_0532 +
3839807-3839961,3840050-3840113,3840203-3840252,
3840337-3840527,3840711-3840771,3840903-3840975,
3841308-3841431,3841512-3841588,3842008-3842084,
3842692-3842763,3843257-3843369,3843462-3843466,
3843894-3844013
Length = 393
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -1
Query: 540 QKFNANFNKILRLQFAIRHSGCATVGRAIGAGLFAITPAGERG 412
+K + N K+L ++ +R+ GC +GR I +T A G
Sbjct: 68 EKSSGNLPKVLSVEDKLRNLGCIGIGRKIAEAEMDLTKAKSEG 110
>03_02_0600 -
9748382-9748933,9749805-9749840,9751164-9751218,
9751588-9751697,9751955-9752602
Length = 466
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +1
Query: 175 QQMQQIRISLRGSSIVLMGKNTMMRKASK-TTWTTIQPSRGG 297
+Q+Q IR +L + +L+ KNT++ KA + T W ++P G
Sbjct: 74 KQLQGIRDTLPETCRLLVAKNTLVGKAIEGTPWEALKPCMKG 115
>05_07_0223 - 28496877-28497398
Length = 173
Score = 28.3 bits (60), Expect = 5.0
Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Frame = +2
Query: 281 SPRGGARYPIRPIVSRITIHWPSFYNVVTGKTLALPN--LIALQHIPLSPAGVIAKRPAP 454
+P A P ++ R+ H P+ VV TLA+ L+ L + L+ A V P
Sbjct: 23 APAASADSPSTTLLRRVQTHAPNSTQVVGFLTLAVSGAVLLLLTGLTLTGAVVALIFLGP 82
Query: 455 IALPTVAQPEWRMANCKRNILLKFALNFC 541
IAL T P W +L AL+ C
Sbjct: 83 IALLT--SPIWVPVAVALFVLAAAALSAC 109
>06_01_0092 - 775290-775691
Length = 133
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = -2
Query: 449 RASSLLRQLAKGGCAARR 396
RA+SLLRQL + GCAA +
Sbjct: 22 RAASLLRQLIEDGCAAAK 39
>11_06_0395 + 23088737-23088823,23090198-23090346,23090570-23090708,
23090795-23090889,23090967-23091080,23091674-23091803,
23091931-23092052,23092889-23093007,23093946-23094034,
23094072-23094245,23094310-23094616,23094726-23095180,
23095334-23096315,23096381-23097396,23097757-23097792,
23098065-23098130
Length = 1359
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +1
Query: 133 YPKCFI--VGADNVGSQQMQQIRISLRGSSIV 222
Y KC I VG DN+ Q MQQ R SL I+
Sbjct: 1292 YTKCLIISVGRDNIPWQWMQQNRTSLETLEIL 1323
>11_04_0129 -
13763651-13763911,13763978-13764327,13764448-13764606,
13764677-13765160
Length = 417
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/47 (25%), Positives = 19/47 (40%)
Frame = +2
Query: 410 IPLSPAGVIAKRPAPIALPTVAQPEWRMANCKRNILLKFALNFC*IN 550
I SP + A P+P+ + P W C N ++ + C N
Sbjct: 20 IKTSPTDLTAASPSPLPASPTSAPTWYSTVCPNNNIMYTTASSCHFN 66
>05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225
Length = 554
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1
Query: 91 KSNYFVKIIQLLDEYPKCF 147
+++Y VKII+LL EY CF
Sbjct: 68 RADYKVKIIELLKEYVDCF 86
>04_01_0312 +
4206400-4206627,4206661-4207269,4207425-4207902,
4208006-4208297,4209278-4209569,4210013-4210465
Length = 783
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +2
Query: 341 WPSFYNVV-TGKTLALPNLIALQH 409
W F N+V +G TL+LP + LQH
Sbjct: 133 WSRFTNLVQSGPTLSLPEYVLLQH 156
>02_05_0634 +
30513920-30514136,30514674-30514717,30515547-30515595,
30515663-30515835
Length = 160
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +2
Query: 410 IPLSPAGVIAKRPAPIALPTVAQPEWRMANCKRNILLKFALN 535
+P+ AG+I K +A+ VAQP+ +C NIL+K ++N
Sbjct: 95 LPVMFAGIIVKDIVKVAMLVVAQPQ----SC-INILMKLSIN 131
>01_05_0017 - 17199365-17199757,17200040-17200156
Length = 169
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +2
Query: 266 PGQQSSPRGGARYPIRPIVSRITIHWPSFYNVV-TGKTLALPNLIALQH 409
P S P Y IRP + I+ F N+V +G TL+LP + LQH
Sbjct: 18 PPPSSEPIYTTVYEIRPEL----INMSRFTNLVQSGPTLSLPEYVLLQH 62
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,376,998
Number of Sequences: 37544
Number of extensions: 406276
Number of successful extensions: 1107
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1107
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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