Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0303
         (606 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M25772-1|AAA53372.1|  317|Drosophila melanogaster DNA repair pro...   109   4e-24
BT021447-1|AAX33595.1|  317|Drosophila melanogaster GH01513p pro...   109   4e-24
AY075528-1|AAL68335.1|  317|Drosophila melanogaster RE74511p pro...   109   4e-24
AE014296-3653|AAF51807.1|  317|Drosophila melanogaster CG7490-PA...   109   4e-24
AY061517-1|AAL29065.1|  256|Drosophila melanogaster LD47064p pro...    33   0.30 
AE013599-1019|AAF58844.1|  256|Drosophila melanogaster CG1381-PA...    33   0.30 

>M25772-1|AAA53372.1|  317|Drosophila melanogaster DNA repair
           protein protein.
          Length = 317

 Score =  109 bits (261), Expect = 4e-24
 Identities = 47/64 (73%), Positives = 57/64 (89%)
 Frame = +1

Query: 64  MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 243
           M RE+KA WK+ YF+K+++L DE+PKCFIVGADNVGS+QMQ IR SLRG ++VLMGKNTM
Sbjct: 1   MVRENKAAWKAQYFIKVVELFDEFPKCFIVGADNVGSKQMQNIRTSLRGLAVVLMGKNTM 60

Query: 244 MRKA 255
           MRKA
Sbjct: 61  MRKA 64


>BT021447-1|AAX33595.1|  317|Drosophila melanogaster GH01513p
           protein.
          Length = 317

 Score =  109 bits (261), Expect = 4e-24
 Identities = 47/64 (73%), Positives = 57/64 (89%)
 Frame = +1

Query: 64  MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 243
           M RE+KA WK+ YF+K+++L DE+PKCFIVGADNVGS+QMQ IR SLRG ++VLMGKNTM
Sbjct: 1   MVRENKAAWKAQYFIKVVELFDEFPKCFIVGADNVGSKQMQNIRTSLRGLAVVLMGKNTM 60

Query: 244 MRKA 255
           MRKA
Sbjct: 61  MRKA 64


>AY075528-1|AAL68335.1|  317|Drosophila melanogaster RE74511p
           protein.
          Length = 317

 Score =  109 bits (261), Expect = 4e-24
 Identities = 47/64 (73%), Positives = 57/64 (89%)
 Frame = +1

Query: 64  MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 243
           M RE+KA WK+ YF+K+++L DE+PKCFIVGADNVGS+QMQ IR SLRG ++VLMGKNTM
Sbjct: 1   MVRENKAAWKAQYFIKVVELFDEFPKCFIVGADNVGSKQMQNIRTSLRGLAVVLMGKNTM 60

Query: 244 MRKA 255
           MRKA
Sbjct: 61  MRKA 64


>AE014296-3653|AAF51807.1|  317|Drosophila melanogaster CG7490-PA
           protein.
          Length = 317

 Score =  109 bits (261), Expect = 4e-24
 Identities = 47/64 (73%), Positives = 57/64 (89%)
 Frame = +1

Query: 64  MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 243
           M RE+KA WK+ YF+K+++L DE+PKCFIVGADNVGS+QMQ IR SLRG ++VLMGKNTM
Sbjct: 1   MVRENKAAWKAQYFIKVVELFDEFPKCFIVGADNVGSKQMQNIRTSLRGLAVVLMGKNTM 60

Query: 244 MRKA 255
           MRKA
Sbjct: 61  MRKA 64


>AY061517-1|AAL29065.1|  256|Drosophila melanogaster LD47064p
           protein.
          Length = 256

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 18/71 (25%), Positives = 35/71 (49%)
 Frame = +1

Query: 37  RSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSS 216
           R    +L++  R+  A WK      I   + +YP  F+    N+ +  ++ +R  L+ +S
Sbjct: 6   RDKKVSLTKTDRKGLA-WKQRIVDDIRFCVGKYPNIFVFQVQNMRNSLLKDLRQELKKNS 64

Query: 217 IVLMGKNTMMR 249
             + GKN +M+
Sbjct: 65  RFIFGKNRVMQ 75


>AE013599-1019|AAF58844.1|  256|Drosophila melanogaster CG1381-PA
           protein.
          Length = 256

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 18/71 (25%), Positives = 35/71 (49%)
 Frame = +1

Query: 37  RSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSS 216
           R    +L++  R+  A WK      I   + +YP  F+    N+ +  ++ +R  L+ +S
Sbjct: 6   RDKKVSLTKTDRKGLA-WKQRIVDDIRFCVGKYPNIFVFQVQNMRNSLLKDLRQELKKNS 64

Query: 217 IVLMGKNTMMR 249
             + GKN +M+
Sbjct: 65  RFIFGKNRVMQ 75


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,378,735
Number of Sequences: 53049
Number of extensions: 635048
Number of successful extensions: 2101
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2101
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2482967880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)