Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0303
         (606 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)...    73   1e-13
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)...    73   1e-13
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)       70   1e-12
At2g19190.1 68415.m02239 light-responsive receptor protein kinas...    29   1.8  
At5g13260.1 68418.m01523 expressed protein                             28   4.2  
At1g27020.1 68414.m03294 expressed protein                             27   7.3  
At5g43745.1 68418.m05349 phosphotransferase-related similar to s...    27   9.6  
At3g16010.1 68416.m02025 pentatricopeptide (PPR) repeat-containi...    27   9.6  
At2g40890.1 68415.m05046 cytochrome P450 98A3, putative (CYP98A3...    27   9.6  
At1g69870.1 68414.m08041 proton-dependent oligopeptide transport...    27   9.6  

>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
           similar to 60S acidic ribosomal protein P0 GI:2088654
           [Arabidopsis thaliana]
          Length = 323

 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 35/64 (54%), Positives = 45/64 (70%)
 Frame = +1

Query: 64  MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 243
           M +  KA  K  Y  K+ QL+DEY +  +V ADNVGS Q+Q IR  LRG S+VLMGKNTM
Sbjct: 1   MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60

Query: 244 MRKA 255
           M+++
Sbjct: 61  MKRS 64


>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
           similar to putative 60S acidic ribosomal protein P0
           GB:P50346 [Glycine max]
          Length = 320

 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 35/64 (54%), Positives = 45/64 (70%)
 Frame = +1

Query: 64  MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 243
           M +  KA  K  Y  K+ QL+DEY +  +V ADNVGS Q+Q IR  LRG S+VLMGKNTM
Sbjct: 1   MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60

Query: 244 MRKA 255
           M+++
Sbjct: 61  MKRS 64


>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 
          Length = 317

 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 34/59 (57%), Positives = 43/59 (72%)
 Frame = +1

Query: 79  KATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKA 255
           KA  K  Y  K+ QLL+EY +  +V ADNVGS Q+Q IR  LRG S+VLMGKNTMM+++
Sbjct: 7   KAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRS 65


>At2g19190.1 68415.m02239 light-responsive receptor protein kinase /
           senescence-responsive receptor-like serine/threonine
           kinase, putative (SIRK) similar to light repressible
           receptor protein kinase [Arabidopsis thaliana]
           gi|1321686|emb|CAA66376; contains Pfam profiles PF00069:
           Protein kinase domain and PF00560: Leucine Rich Repeat
          Length = 876

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 484 FRLRNCWKGDRCGPLRYYASWRKGDVLQGD 395
           +R++  W+GD C P+ Y  SW   D +Q D
Sbjct: 382 YRVKKNWQGDPCVPVDY--SWEGIDCIQSD 409


>At5g13260.1 68418.m01523 expressed protein
          Length = 537

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 223 ARYWSHVARYGSAASVASPRYRH 155
           ARYW   +RYG  + +A+ +Y +
Sbjct: 330 ARYWGLASRYGICSDIATSKYEY 352


>At1g27020.1 68414.m03294 expressed protein
          Length = 308

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 367 WENPGVTQLNRLAAHPPFASW 429
           WE P  T  N+LA    FA+W
Sbjct: 163 WEKPTSTDFNQLAKESEFAAW 183


>At5g43745.1 68418.m05349 phosphotransferase-related similar to
           streptomycin-3'-phosphotransferase [Streptomyces
           griseus] GI:153164
          Length = 817

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 310 NWVPGPPSRAGLLSRWSLMLCAS*C 236
           +W+ G PSRA   S +SL+L  S C
Sbjct: 653 DWLLGDPSRADKQSAYSLLLAESIC 677


>At3g16010.1 68416.m02025 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 642

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -2

Query: 509 YAYNLPFAIQAAQLLEGRSVRASSLLRQLAKGGCAA 402
           YAYN   A+ +  +  G    A+SLLR++ + GC A
Sbjct: 515 YAYN---ALMSGMVKAGMINEANSLLRKMEENGCRA 547


>At2g40890.1 68415.m05046 cytochrome P450 98A3, putative (CYP98A3)
           identical to Cytochrome P450 98A3 (SP|O22203)
           [Arabidopsis thaliana]; similar to gi:17978651 from
           Pinus taeda
          Length = 508

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +2

Query: 251 KHQRPPGQQSSPRGGARYPIRPIVSRITIHWPSFYNVV 364
           +++ PPG    P  G  Y I+P+  R    W   Y  +
Sbjct: 24  RYKFPPGPSPKPIVGNLYDIKPVRFRCYYEWAQSYGPI 61


>At1g69870.1 68414.m08041 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 620

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = -1

Query: 588 GILPISAYWLKNKLI*QKFNANFNKILRLQFAIRHSGCATVGRAIGAGLFAITPAG 421
           G+ P+S +WL  +LI       FN I +++F   +S      R+I   LF+++ AG
Sbjct: 479 GMTPMSVFWLSPQLILMGLCEAFNIIGQIEFF--NSQFPEHMRSIANSLFSLSFAG 532


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,249,345
Number of Sequences: 28952
Number of extensions: 300965
Number of successful extensions: 714
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)