Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0301
(638 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 186 2e-48
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 110 1e-25
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 103 3e-23
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 102 4e-23
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 73 4e-14
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 67 2e-12
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 57 2e-09
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 44 1e-05
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.061
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 31 0.14
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 30 0.32
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 29 0.43
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 2.3
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 27 2.3
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ... 27 3.0
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.0
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 26 4.0
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 4.0
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 25 7.0
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.0
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 25 9.2
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch... 25 9.2
SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|... 25 9.2
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 186 bits (453), Expect = 2e-48
Identities = 90/122 (73%), Positives = 97/122 (79%)
Frame = +1
Query: 253 QRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEASLNPKANRENMT 432
+RGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEA LNPK+NRE MT
Sbjct: 61 KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMT 120
Query: 433 QIMFETFNTPAMYVSIQAVLSLYASGVPPVSCLDFRDGVSHTVPILPKDTHFPTPSCRLD 612
QI+FETFN PA YV+IQAVLSLYASG LD DGV+HTVPI + P RLD
Sbjct: 121 QIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIY-EGYALPHAIMRLD 179
Query: 613 FS 618
+
Sbjct: 180 LA 181
Score = 124 bits (300), Expect = 8e-30
Identities = 55/60 (91%), Positives = 59/60 (98%)
Frame = +2
Query: 77 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 256
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 110 bits (265), Expect = 1e-25
Identities = 47/104 (45%), Positives = 73/104 (70%)
Frame = +1
Query: 256 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEASLNPKANRENMTQ 435
R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE +NP ANRE M +
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121
Query: 436 IMFETFNTPAMYVSIQAVLSLYASGVPPVSCLDFRDGVSHTVPI 567
MFE + +YV+IQAVLSLYA G+ +D DGV+H VP+
Sbjct: 122 TMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPV 165
Score = 54.4 bits (125), Expect = 1e-08
Identities = 29/59 (49%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Frame = +2
Query: 83 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQS 253
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEA 60
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 103 bits (246), Expect = 3e-23
Identities = 48/105 (45%), Positives = 69/105 (65%), Gaps = 1/105 (0%)
Frame = +1
Query: 256 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEASLNPKANRENMT 432
RG+L ++ PIE GI+ NW DME+IW + + ++ L PEEHP+LLTE L N+E +
Sbjct: 66 RGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIA 125
Query: 433 QIMFETFNTPAMYVSIQAVLSLYASGVPPVSCLDFRDGVSHTVPI 567
+ +ET N PA+ S+Q VL+LYAS L+ DG++H+VPI
Sbjct: 126 EYFYETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPI 170
Score = 69.7 bits (163), Expect = 3e-13
Identities = 30/53 (56%), Positives = 39/53 (73%)
Frame = +2
Query: 95 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 253
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQN 64
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 102 bits (245), Expect = 4e-23
Identities = 48/108 (44%), Positives = 66/108 (61%), Gaps = 8/108 (7%)
Frame = +1
Query: 268 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEASLNPKANRENMTQIMFE 447
+L YPI HG + NWD ME+ W + + LR PE+H LLTE LNP NREN +IMFE
Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFE 148
Query: 448 TFNTPAMYVSIQAVLSLYASGVPPV--------SCLDFRDGVSHTVPI 567
+FN +Y+++QAVL+L AS + +D DGV+H +P+
Sbjct: 149 SFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPV 196
Score = 42.7 bits (96), Expect = 4e-05
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +2
Query: 95 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGDE 244
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 72.9 bits (171), Expect = 4e-14
Identities = 34/99 (34%), Positives = 56/99 (56%), Gaps = 2/99 (2%)
Frame = +1
Query: 280 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEASLNPKANRENMTQIMFETFNT 459
P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE +N
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNA 144
Query: 460 PAMYVSIQAVLSLYASGVPPVS--CLDFRDGVSHTVPIL 570
P++ I + S Y + P S L+ + SH +P+L
Sbjct: 145 PSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVL 183
Score = 35.9 bits (79), Expect = 0.005
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 95 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 190
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 66.9 bits (156), Expect = 2e-12
Identities = 30/82 (36%), Positives = 45/82 (54%)
Frame = +1
Query: 265 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEASLNPKANRENMTQIMF 444
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 445 ETFNTPAMYVSIQAVLSLYASG 510
E+ PA Y++ Q + +ASG
Sbjct: 123 ESLRCPATYLAKQETCAAFASG 144
Score = 40.3 bits (90), Expect = 2e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +2
Query: 80 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 181
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 57.2 bits (132), Expect = 2e-09
Identities = 25/94 (26%), Positives = 49/94 (52%)
Frame = +1
Query: 289 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEASLNPKANRENMTQIMFETFNTPAM 468
+GI+ +W+ W +L+V P E+ +++TE S NP++ R+ + + FE + PA
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAF 133
Query: 469 YVSIQAVLSLYASGVPPVSCLDFRDGVSHTVPIL 570
Y++ QAV +A+ +D + P++
Sbjct: 134 YLTKQAVCVAFANSKSTALIVDIGSDNASVTPVV 167
Score = 38.7 bits (86), Expect = 7e-04
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = +2
Query: 80 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 250
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQ 58
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 44.4 bits (100), Expect = 1e-05
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Frame = +1
Query: 280 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEASLNPKANRENMTQIMFE 447
PI+ G V +W+ ++ W H Y+ L P + +PV L + +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 448 TFNTPAMYVSIQAVLSLYASGVPPVSCLDFRDGVSHTVPIL 570
P ++ + ++ LYA G+ +D + PIL
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPIL 212
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 32.3 bits (70), Expect = 0.061
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +1
Query: 340 FYNELRVAPEEHPVLLTE--ASLNPKANRENMTQIMFETFNTPAMYVSIQAVLSLYASGV 513
+Y L E+HP+LLT+ A+L P+ + + +I ++ NTP + + A+ L V
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQHLNIQAV 1458
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 31.1 bits (67), Expect = 0.14
Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Frame = -3
Query: 261 TSLLCASS----PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTT 97
TS C +S PT S P+ PT+ P P N S P PL+TT
Sbjct: 389 TSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATT 448
Query: 96 NAATSSS 76
N TS+S
Sbjct: 449 NCTTSTS 455
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 29.9 bits (64), Expect = 0.32
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Frame = +2
Query: 326 FGIIPSTMSCVSPPRNTQSCSLRLPSTPR--PTERI*PRSCSKHSTRPPCTSPSKPCSRC 499
+G+ + S SP +T + PS+P PT + +S P SP+ P
Sbjct: 1551 YGLTSPSYSPSSPGYSTSPAYM--PSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSA 1608
Query: 500 TRPAYHRYRAWTSATVSPTPCPSYQRIHTSPRH 598
T P+Y + TS + SPT PSY TSP +
Sbjct: 1609 TSPSY----SPTSPSYSPT-SPSYS--PTSPSY 1634
Score = 25.4 bits (53), Expect = 7.0
Identities = 29/87 (33%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
Frame = +2
Query: 350 SCVSPPRNTQSCSLRLPSTPRPTERI*PRSCSKHSTRPPCTSPSKPCSRCTRPAYH---- 517
S +SP S S S T S +S P SP+ P T P+Y
Sbjct: 1545 SAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1604
Query: 518 RYRAWTSATVSPTPCPSYQRIHTSPRH 598
Y A TS + SPT PSY TSP +
Sbjct: 1605 SYSA-TSPSYSPT-SPSYS--PTSPSY 1627
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 29.5 bits (63), Expect = 0.43
Identities = 19/55 (34%), Positives = 22/55 (40%)
Frame = +2
Query: 353 CVSPPRNTQSCSLRLPSTPRPTERI*PRSCSKHSTRPPCTSPSKPCSRCTRPAYH 517
C PP Q L ++PR PR +T S SKP S T P YH
Sbjct: 284 CTHPPSLNQLNKFHLDASPRQAR---PRRSVSLATGLNSPSVSKPPSSATGPLYH 335
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.1 bits (57), Expect = 2.3
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 608 RRQDGVGKCVSFGKMGTVWE 549
R QD + K +SFG G+ WE
Sbjct: 1738 RLQDNIEKDISFGSFGSPWE 1757
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 140 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 253
G+ PRA F ++ P H G+++ M KD G+E S
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMS 537
>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 324
Score = 26.6 bits (56), Expect = 3.0
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +1
Query: 460 PAMYVSIQAVLSLYASGVPPVSCLDFRDGVSHTVPILPKDTHFPTPSCRLDFS 618
PA +V+I AV+ + + V+CL F VPI+ +CRLD S
Sbjct: 11 PAHWVTILAVILFSIAFILHVACLAFTRKWLVIVPIIGTIGELAGWACRLDAS 63
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 3.0
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -3
Query: 240 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 124
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 26.2 bits (55), Expect = 4.0
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Frame = +2
Query: 335 IPSTMSC-VSPPRNTQSCSLRLPSTPR-----PTERI*PRSCSKHSTRPPCTSPSKPCSR 496
+P+T S V+P +++S S PSTPR ++ P+ +S P T PSK
Sbjct: 425 LPTTTSPKVNPEPHSESISDTRPSTPRKVPPSTVPKMNPKLQGGNSVTAPST-PSKVLPA 483
Query: 497 CTRPAYHRYRAWTSATVSPTP 559
+ +++ S+T TP
Sbjct: 484 MSPKVAPKFQGGRSSTAPSTP 504
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 26.2 bits (55), Expect = 4.0
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -1
Query: 248 VPHLQHKSPSVPYRPSRPDGGAFPRSRGTR 159
+ L K+PS PY SRP A S TR
Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPTR 335
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 25.4 bits (53), Expect = 7.0
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = +3
Query: 519 GIVPGLPRRCLPHRAHLTKGYT--LPHAILPSGL 614
G P LP +PH T PHA+LP+GL
Sbjct: 16 GRTPHLPPLTIPHTVSAEGLATPNTPHALLPTGL 49
>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 25.4 bits (53), Expect = 7.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 359 SPPRNTQSCSLRLPSTPRPTER 424
SPP++T+ S R PS P E+
Sbjct: 285 SPPQSTRPSSTRFPSVPLSDEK 306
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.0 bits (52), Expect = 9.2
Identities = 21/81 (25%), Positives = 26/81 (32%)
Frame = +2
Query: 359 SPPRNTQSCSLRLPSTPRPTERI*PRSCSKHSTRPPCTSPSKPCSRCTRPAYHRYRAWTS 538
S +T S S PR + + S +PP S P T P TS
Sbjct: 412 STANDTNGSSSSSSSNPRTSSPL----ASNAENKPPVAQQSPPVLLPTLPPIQTTTIQTS 467
Query: 539 ATVSPTPCPSYQRIHTSPRHP 601
V+P P SP P
Sbjct: 468 REVAPPPSSINSNRAASPFRP 488
>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 684
Score = 25.0 bits (52), Expect = 9.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -1
Query: 617 LKSRRQDGVGKCVSFGKMGTVWETPSRKSRH 525
+K RQ +C+ +G+ T E +RK RH
Sbjct: 66 VKCNRQYPCTRCLKYGEACTYDERDNRKKRH 96
>SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 277
Score = 25.0 bits (52), Expect = 9.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 537 EVQARYRWYAGRVQREHGLDGDVHGG 460
E+ YRW R+Q+EH L +H G
Sbjct: 206 EINYVYRW---RLQQEHALKARIHKG 228
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,013,268
Number of Sequences: 5004
Number of extensions: 72274
Number of successful extensions: 233
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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