Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0301
         (638 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    28   0.088
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    25   0.47 
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    25   0.47 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    24   1.4  
U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    22   4.4  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   7.6  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 27.9 bits (59), Expect = 0.088
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +1

Query: 505 SGVPPVSCLDFRDGVSHTVPILPKDTHFPTPSCRLDFSPSRPY 633
           +G+PP +CL F  G   +V  +P   H     C  DFS S PY
Sbjct: 142 TGIPPTTCLVFSSG---SVSCVPSVKH--VAKCATDFS-SWPY 178


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +3

Query: 504 VRRTTGIVPGLPRRCLPHRAHLTKGYTLPHAILPSG 611
           V  T+G+V G PR  L    H+   Y +P A  P G
Sbjct: 40  VETTSGLVRGFPRTVLDKEVHVF--YGIPFAKPPIG 73


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +3

Query: 504 VRRTTGIVPGLPRRCLPHRAHLTKGYTLPHAILPSG 611
           V  T+G+V G PR  L    H+   Y +P A  P G
Sbjct: 40  VETTSGLVRGFPRTVLDKEVHVF--YGIPFAKPPIG 73


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/46 (19%), Positives = 22/46 (47%)
 Frame = +2

Query: 443 SKHSTRPPCTSPSKPCSRCTRPAYHRYRAWTSATVSPTPCPSYQRI 580
           S  +    C +  +  S+C++ + H     T + + PTP  ++ ++
Sbjct: 347 STETLNTKCNTLERTPSKCSQTSVHYSNGQTHSQLCPTPRSTHLKV 392


>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 513 YAGRVQREHGLDGDVHGG 460
           Y  RV  ++G+ GD +GG
Sbjct: 60  YKQRVYDKNGMTGDAYGG 77


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 116 GMCKAGFAGD 145
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,913
Number of Sequences: 438
Number of extensions: 5868
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)