Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0298
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma...    29   0.87 
SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit S4|S...    27   3.5  
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac...    26   6.1  
SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   8.1  

>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 387

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 296 NLVSPFYYRRGPCVKSILCLSFVTNTCLYL 207
           NLVSP  +  G C  +IL +S+ T   L+L
Sbjct: 83  NLVSPVDFHAGYCFAAILSISWATGFILFL 112


>SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -3

Query: 545 HV-GIPMTESS*SLCPGD*YTADQQCFLNCV 456
           HV G P   +   L PGD  T DQ+  +NCV
Sbjct: 124 HVNGKPERRAYRQLLPGDLVTVDQKSVMNCV 154


>SPCC777.14 |prp4||serine/threonine protein kinase
           Prp4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 477

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 531 RYANVFYRTSRGCPSILRCISSSERKGKSHLLQY 632
           R   V Y+      SIL  + +++R+GK H++ Y
Sbjct: 191 RNNEVMYKEGLKEVSILERLQAADREGKQHIIHY 224


>SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 277

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 395 VKITSTHSTLHHLIPTVCIQEHNLGNIVDQL 487
           +K+T+ H T   ++  V   EHNL   ++Q+
Sbjct: 134 LKVTNNHITHATIVGQVSGSEHNLSTAIEQV 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,034,359
Number of Sequences: 5004
Number of extensions: 62485
Number of successful extensions: 128
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)