Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0298
         (712 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_1024 - 21801411-21801725,21801881-21801989,21802200-218023...    31   1.2  
05_04_0069 - 17639386-17641380                                         29   3.6  
12_02_0348 - 17816851-17817387                                         28   8.4  
12_02_0345 - 17767704-17768240                                         28   8.4  

>04_03_1024 -
           21801411-21801725,21801881-21801989,21802200-21802375,
           21802489-21802571,21803228-21803279
          Length = 244

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 712 WDEDNSHCIWAVTSVTVLRHQAGEGR*YCKR 620
           +D D   C W +  V + R QAG+GR   K+
Sbjct: 192 YDMDLCECTWGIADVKINRQQAGKGRPLSKK 222


>05_04_0069 - 17639386-17641380
          Length = 664

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = -1

Query: 286 VHFTIAVGRV*NRSFVCPSLLIHAYI-FGLLFASVSILDMM-HRLTLNIFAIALSLASN 116
           +H   AV  V   +FV  SLL HAY+ FG    + S+LD M HR  +   A+  + AS+
Sbjct: 42  LHAAAAVAGVSRDAFVASSLL-HAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASH 99


>12_02_0348 - 17816851-17817387
          Length = 178

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 239 NKGSIL-HTAHGDSKMDSRDLCAMMVFDNDRHYQG 340
           NKG  L HT+HG+++ D   +  + +  ND+ Y G
Sbjct: 40  NKGDGLRHTSHGENEDDVNQVDGLRLTKNDQAYYG 74


>12_02_0345 - 17767704-17768240
          Length = 178

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 239 NKGSIL-HTAHGDSKMDSRDLCAMMVFDNDRHYQG 340
           NKG  L HT+HG+++ D   +  + +  ND+ Y G
Sbjct: 40  NKGDGLRHTSHGENEDDVNQVDGLRLTKNDQAYYG 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,735,080
Number of Sequences: 37544
Number of extensions: 404407
Number of successful extensions: 816
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)