Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0298
         (712 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54257| Best HMM Match : Cache (HMM E-Value=4.4e-09)                 33   0.30 
SB_4308| Best HMM Match : Ldh_1_C (HMM E-Value=2.6e-31)                31   1.2  
SB_1597| Best HMM Match : PHD (HMM E-Value=1.4e-05)                    29   2.8  
SB_38386| Best HMM Match : PALP (HMM E-Value=4.1e-10)                  29   4.9  

>SB_54257| Best HMM Match : Cache (HMM E-Value=4.4e-09)
          Length = 820

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 97  TPYFCNNLNDVRISCYISIHTP 32
           TP +CNNL D+R   Y +IH P
Sbjct: 722 TPQWCNNLEDLRSQLYYTIHLP 743


>SB_4308| Best HMM Match : Ldh_1_C (HMM E-Value=2.6e-31)
          Length = 368

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +3

Query: 579 LRCISSSERKGKSHLLQYYLPSPAW 653
           +R  SSS +  K+HL++ Y+P+P+W
Sbjct: 19  VRQFSSSSQTYKNHLIKSYVPTPSW 43


>SB_1597| Best HMM Match : PHD (HMM E-Value=1.4e-05)
          Length = 763

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 580 YAAFPALKERARVTFCSIICLHLLGVVRLSLKSQPKCN 693
           YAA  +LK  +R  F   IC  +     +S+K  P C+
Sbjct: 579 YAALCSLKSHSRTCFLGTICKSISKTSEMSIKLGPSCS 616


>SB_38386| Best HMM Match : PALP (HMM E-Value=4.1e-10)
          Length = 736

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +2

Query: 230 RRTNKGSILHTAHGDSKMDSRDLCAMMVFDNDRH 331
           +R  +G I+  A+ +SK  ++++C +   DN+ H
Sbjct: 377 KRRTRGEIISKAYCESKFPNKNICNLTRLDNNLH 410


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,697,170
Number of Sequences: 59808
Number of extensions: 510818
Number of successful extensions: 1107
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)