Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0298
         (712 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.6  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.0  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.0  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.0  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.0  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.0  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.0  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   5.0  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   5.0  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   8.7  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 558 SRGCPSILRCISSS 599
           SRGC ++LRC+  S
Sbjct: 143 SRGCTAVLRCVVPS 156


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 558 SRGCPSILRCISSS 599
           SRGC ++LRC+  S
Sbjct: 143 SRGCTAVLRCVVPS 156


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
 Frame = -2

Query: 636 DNTAKGD-SCPFFQSWKCSVILTDSLCLFYRTRWHTYDRIFVI 511
           D   K D S      WK + ++ D LCL   T +     I ++
Sbjct: 410 DRMKKADESDEIISDWKFAAMVVDRLCLIVFTLFTVLATIVIL 452


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
 Frame = -2

Query: 636 DNTAKGD-SCPFFQSWKCSVILTDSLCLFYRTRWHTYDRIFVI 511
           D   K D S      WK + ++ D LCL   T +     I ++
Sbjct: 410 DRMKKADESDEIISDWKFAAMVVDRLCLIVFTLFTVLATIVIL 452


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
 Frame = -2

Query: 636 DNTAKGD-SCPFFQSWKCSVILTDSLCLFYRTRWHTYDRIFVI 511
           D   K D S      WK + ++ D LCL   T +     I ++
Sbjct: 410 DRMKKADESDEIISDWKFAAMVVDRLCLIVFTLFTVLATIVIL 452


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
 Frame = -2

Query: 636 DNTAKGD-SCPFFQSWKCSVILTDSLCLFYRTRWHTYDRIFVI 511
           D   K D S      WK + ++ D LCL   T +     I ++
Sbjct: 410 DRMKKADESDEIISDWKFAAMVVDRLCLIVFTLFTVLATIVIL 452


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
 Frame = -2

Query: 636 DNTAKGD-SCPFFQSWKCSVILTDSLCLFYRTRWHTYDRIFVI 511
           D   K D S      WK + ++ D LCL   T +     I ++
Sbjct: 410 DRMKKADESDEIISDWKFAAMVVDRLCLIVFTLFTVLATIVIL 452


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
 Frame = -2

Query: 636 DNTAKGD-SCPFFQSWKCSVILTDSLCLFYRTRWHTYDRIFVI 511
           D   K D S      WK + ++ D LCL   T +     I ++
Sbjct: 410 DRMKKADESDEIISDWKFAAMVVDRLCLIVFTLFTVLATIVIL 452


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
 Frame = -2

Query: 636 DNTAKGD-SCPFFQSWKCSVILTDSLCLFYRTRWHTYDRIFVI 511
           D   K D S      WK + ++ D LCL   T +     I ++
Sbjct: 478 DRMKKADESDEIISDWKFAAMVVDRLCLIVFTLFTVLATIVIL 520


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
 Frame = -2

Query: 636 DNTAKGD-SCPFFQSWKCSVILTDSLCLFYRTRWHTYDRIFVI 511
           D   K D S      WK + ++ D LCL   T +     I ++
Sbjct: 478 DRMKKADESDEIISDWKFAAMVVDRLCLIVFTLFTVLATIVIL 520


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +3

Query: 528 HRYANVFYRTSRGCPSILRCISSSERKGKSHLLQYYLPS 644
           HR  +     S G  S L C     R    +L+Q Y+PS
Sbjct: 193 HRQRHSTIHLSTGNYSRLACEIQFVRSMGYYLIQIYIPS 231


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,061
Number of Sequences: 438
Number of extensions: 4635
Number of successful extensions: 14
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)