Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0298
         (712 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g77122.1 68414.m08984 expressed protein                             29   4.0  
At3g32140.1 68416.m04093 hypothetical protein contains Pfam prof...    28   5.3  
At2g09865.1 68415.m01022 hypothetical protein                          28   5.3  
At5g20370.1 68418.m02423 serine-rich protein-related contains so...    28   7.0  
At4g20400.1 68417.m02978 transcription factor jumonji (jmj) fami...    27   9.3  
At1g23410.1 68414.m02932 ubiquitin extension protein, putative /...    27   9.3  

>At1g77122.1 68414.m08984 expressed protein 
          Length = 323

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 712 WDEDNSHCIWAVTSVTVLRHQAGEGR*YCKR 620
           +D +   CIW +  + V R +AG+GR   K+
Sbjct: 271 FDVEAKICIWGIADIRVNREKAGKGRPLSKK 301


>At3g32140.1 68416.m04093 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 174

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 260 CVKSILCLSFVTNTCLYLWPV 198
           C+K++  L+F TN   Y+WPV
Sbjct: 27  CLKTVSDLTFFTNNEKYIWPV 47


>At2g09865.1 68415.m01022 hypothetical protein
          Length = 339

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 328 TLSRAGCVNTRERAGR*PAGLPRQDH 405
           TLSR GCV +  R  R PA   R +H
Sbjct: 312 TLSRCGCVASTRRRHRSPAPTSRSEH 337


>At5g20370.1 68418.m02423 serine-rich protein-related contains some
           similarity to serine-rich proteins
          Length = 175

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 555 TSRGCPSILRCISSSERKGKSHLLQYYLPSPAWCRKTV 668
           T R   S+LR +SSS+R   +H   +   SP+ C K +
Sbjct: 4   TGRSSRSVLRPLSSSQRLHNNHHHHHRQRSPSPCNKNL 41


>At4g20400.1 68417.m02978 transcription factor jumonji (jmj) family
           protein / zinc finger (C5HC2 type) family protein
           contains Pfam domains, PF02375: jmjN domain, PF02373:
           jmjC domain and PF02928: C5HC2 zinc finger
          Length = 954

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -3

Query: 332 SVCRYQTPSSHINLVSPFYYRRGPCVKS 249
           S CR Q PS H       Y +  PC+KS
Sbjct: 587 SKCRDQYPSQHPRAREYAYLKSAPCIKS 614


>At1g23410.1 68414.m02932 ubiquitin extension protein, putative /
           40S ribosomal protein S27A (RPS27aA) strong similarity
           to ubiquitin extension protein (UBQ5) GB:AAA32906
           GI:166934 from (Arabidopsis thaliana)
          Length = 156

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +3

Query: 243 KDRFYTRPTAIVKWTHE-IYVR*WCLITTDTIKGRMRKHKRESRAIACGPATSRSLQHTP 419
           K + YT+P  I K TH+ + +        D   G++++ K+E  +++CGP T  +     
Sbjct: 81  KKKTYTKPKKI-KHTHKKVKLAVLQFYKVDG-SGKVQRLKKECPSVSCGPGTFMASHFDR 138

Query: 420 HF 425
           H+
Sbjct: 139 HY 140


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,911,675
Number of Sequences: 28952
Number of extensions: 330684
Number of successful extensions: 720
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)