Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0297
         (625 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    24   1.2  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   6.3  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   6.3  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +1

Query: 319 DSKNFDYIPINFDSIDDINSGLLTSNVNF 405
           + K   YIP   ++++D+ +  +T+ VNF
Sbjct: 110 EKKREFYIPPEVENVEDLFTSGITTGVNF 138


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = -2

Query: 423 FCAGWLKVNV*C*QTTVYIVDRIEINRN 340
           F A WLK N       +Y VD I  N N
Sbjct: 424 FHAAWLKNNPEFLDAFLYWVDEILANHN 451


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -1

Query: 217 PNLTITYSSPGRGFVISSTSADAHWDVHTS 128
           P  T++ ++   G    S +++A WDVH++
Sbjct: 166 PFNTMSGATHHGGIKSDSVTSNAWWDVHST 195


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,227
Number of Sequences: 336
Number of extensions: 3087
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15979473
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)