Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0297
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    29   0.72 
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    27   2.9  
SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc...    26   3.8  
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    26   5.1  
SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomy...    25   6.7  
SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo...    25   8.9  
SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.9  
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    25   8.9  

>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 28.7 bits (61), Expect = 0.72
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 340 IPINFDSIDDINSGLLTSNVNFEPAGTEQKQHS 438
           +PI+  S+ D     LT+N  F+P  + Q  HS
Sbjct: 734 VPIDLSSMQDDQVSSLTTNEEFDPLSSFQASHS 766


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +1

Query: 298 TTVAPA-TDSKNFDYIPINFDSIDDINSGLLTSNVNFEPAGT-EQKQHSRIQIKKGPNGQ 471
           ++VAP   D+ NFD +  N  + D+  S +LT+N  F+     E+  ++       P+  
Sbjct: 111 SSVAPFFLDTTNFDRLNDNITTDDEQLSPVLTANQGFQSQEQYEEDSYNNYDYTSDPSSP 170

Query: 472 DY 477
           +Y
Sbjct: 171 NY 172


>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +2

Query: 224 KPAPVKASAKLKTKYLISTDKNRCSL 301
           KP+P   +  LK K      KN CSL
Sbjct: 112 KPSPYLTNCNLKNKDTFPVSKNNCSL 137


>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 64  PARPSRSQQRHDPRGPPSP 120
           P  P + + +  PRGPPSP
Sbjct: 211 PMEPPKFRHKKVPRGPPSP 229


>SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 321

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 328 NFDYIPINFDSIDDINS 378
           NF YIP+  + +D+INS
Sbjct: 279 NFKYIPLTKEDMDEINS 295


>SPAC3A12.17c |cys12|cys1b|cysteine synthase
           Cys12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 395

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 214 NLTITYSSPGRGFVISSTSADAHWDVH 134
           N T+  S PG+G+  +     A+W  H
Sbjct: 178 NHTVDESIPGKGYFANQFENPANWQAH 204


>SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 225

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -2

Query: 363 DRIEINRNVIKVFAVRCGCYSSEQRFLSVLIRYFVF 256
           + IEI+  VI+   +R  CY ++   ++VL   + F
Sbjct: 3   ENIEISTKVIENQEIRFRCYKADSTKIAVLAHPYAF 38


>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 440 ESKLRRGLTGKTMNTNTVYYYY 505
           E + RRG+T K    + +YYY+
Sbjct: 99  EVERRRGITVKAQTCSMIYYYH 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,439,790
Number of Sequences: 5004
Number of extensions: 47827
Number of successful extensions: 121
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)