Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0297
(625 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0432 - 13971574-13972305 29 3.0
09_06_0374 + 22649455-22650024,22650085-22650637,22650812-226511... 29 4.0
02_05_1296 - 35535303-35535551 29 4.0
11_06_0478 + 24073295-24074172,24074790-24075090 28 5.2
11_01_0147 + 1235437-1235587,1235715-1236022,1236266-1236961 28 5.2
07_03_1160 - 24430240-24431268 28 5.2
06_03_1108 - 27661916-27662812,27662889-27663529,27663613-276645... 28 6.9
04_04_0760 - 27837170-27837328,27837441-27837504,27837812-278381... 28 6.9
12_02_0046 + 12830974-12832386 27 9.2
07_01_0551 - 4105721-4105774,4106090-4106159,4106880-4106945,410... 27 9.2
>05_03_0432 - 13971574-13972305
Length = 243
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +1
Query: 40 RTSPLP*IPARPSRSQQRHDPRGPPSPYVYWCARPN 147
RT P IPA+ S P P P+ W +PN
Sbjct: 193 RTLIKPTIPAKKSEQSAEKKPPSAPKPWKVWREKPN 228
>09_06_0374 +
22649455-22650024,22650085-22650637,22650812-22651147,
22651171-22652605,22652939-22653062
Length = 1005
Score = 28.7 bits (61), Expect = 4.0
Identities = 19/43 (44%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Frame = +1
Query: 1 PFRKPR*KPGAERRTSPL---P*IPARPSRSQQRHDPRGPPSP 120
P R PR PG R PL P PARP + R P GP P
Sbjct: 417 PRRPPRRPPGLARPRKPLGRRPPGPARPGKPLGRRPP-GPARP 458
>02_05_1296 - 35535303-35535551
Length = 82
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = -1
Query: 244 CLDWSGLVDPNLTITYSSPGRGFVISSTSADAHWDVHTSKHRATAGHAGH 95
C++ S D +L + S R V+S +A AH D H A A H
Sbjct: 25 CINLSTDDDDDLADAHESKDRPLVLSDANAHAHTDAHPDPPAAAADADKH 74
>11_06_0478 + 24073295-24074172,24074790-24075090
Length = 392
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +1
Query: 28 GAERRTSPLP*IPARPSRSQQRHDP-RGPPSPYVYW 132
G ERRT PLP R + R P R PP P W
Sbjct: 45 GGERRTKPLPAPRRRQKLAVARDRPLRRPPPPLGNW 80
>11_01_0147 + 1235437-1235587,1235715-1236022,1236266-1236961
Length = 384
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 97 DPRGPPSPYVYWCARPNGRPLMWN*SQN 180
+P PPSP +Y PN + L +N + N
Sbjct: 252 EPPAPPSPLIYTTPHPNYQTLNYNINSN 279
>07_03_1160 - 24430240-24431268
Length = 342
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 49 PLP*IPARPSRSQQRHDPRGPPSPYVYWCARPNGRP 156
P P +P +P + Q P GPP P + +P+G P
Sbjct: 170 PNPNVPPKPDQPPQPI-PNGPPKPDMLPMPKPDGSP 204
>06_03_1108 -
27661916-27662812,27662889-27663529,27663613-27664592,
27664854-27664934,27668582-27668634,27669294-27669308,
27670069-27670296
Length = 964
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -1
Query: 217 PNLTITYSSPGRGFVISSTSADAHWDVHTSKHRAT 113
P+ + + PG G V+S+ ++D + +HTS R T
Sbjct: 157 PDSFLAATRPGGGRVLSTATSDLTFAIHTSPFRFT 191
>04_04_0760 -
27837170-27837328,27837441-27837504,27837812-27838160,
27838906-27838960,27839489-27839821
Length = 319
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = +1
Query: 31 AERRTSPLP*IPARPSRSQQRHDPRGPPSPYVYWCARPNGRPL 159
A T+P P P PS S DP+ PP P A P R L
Sbjct: 3 APTTTTPPP-PPPPPSESTPTSDPKPPPPPPTSSTAAPKKRKL 44
>12_02_0046 + 12830974-12832386
Length = 470
Score = 27.5 bits (58), Expect = 9.2
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
Frame = +1
Query: 13 PR*KPGAERRTSPLP*IP-----ARPSRSQQRHDP-RGPPSP 120
PR P + R +PLP P PS RHDP PPSP
Sbjct: 319 PRPAPPSRRVMAPLPPYPMDPFETPPSPHAPRHDPFEPPPSP 360
>07_01_0551 -
4105721-4105774,4106090-4106159,4106880-4106945,
4106985-4107479,4107491-4107672,4107728-4108222
Length = 453
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = -1
Query: 289 VFVCAYKVFCFQFSGCLDWSGLVDPNLTITYSSPGRGFVISSTSADAHW 143
+F C Y+ FC+ S L + LV + + S +G + S S W
Sbjct: 382 IFTCCYRQFCY-ISSVL-YGDLVSGSAKVQTCSRNKGLIFCSESEPEWW 428
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,093,094
Number of Sequences: 37544
Number of extensions: 320035
Number of successful extensions: 853
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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