Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0297
         (625 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59010| Best HMM Match : rve (HMM E-Value=0.0052)                    29   3.1  
SB_53385| Best HMM Match : DUF1388 (HMM E-Value=0.66)                  27   9.4  
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_59010| Best HMM Match : rve (HMM E-Value=0.0052)
          Length = 935

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +1

Query: 22  KPGAERRTSPLP*IPARPSRSQQRHDPRGPPSPYVYWCARPNGRPLMWN 168
           K   E   +P+  +PA  +R +  H+PR    P   W +R   R   WN
Sbjct: 580 KQHQEPARTPVAAVPAATTRERANHEPRTARDPTSPWTSR--SRMAKWN 626


>SB_53385| Best HMM Match : DUF1388 (HMM E-Value=0.66)
          Length = 264

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/53 (33%), Positives = 22/53 (41%)
 Frame = +1

Query: 1   PFRKPR*KPGAERRTSPLP*IPARPSRSQQRHDPRGPPSPYVYWCARPNGRPL 159
           P   PR  P  + R    P  P  P+R Q+ H P  PP P        + RPL
Sbjct: 128 PLEPPR--PQEQHRPQE-PHRPLEPTRPQESHRPLEPPRPQEQHRPLESHRPL 177


>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3934

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
 Frame = +1

Query: 355  DSIDDINSGLLTSNVNFEPAGTEQKQ------HSRIQIKK 456
            DS+ D  + L TSN N+E +  E+K+      HS  Q+KK
Sbjct: 2941 DSLTDAKNQLTTSNNNYEGSERERKRLMEELIHSEEQVKK 2980


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,882,450
Number of Sequences: 59808
Number of extensions: 379043
Number of successful extensions: 908
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)