Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0297
         (625 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93389-5|CAI79177.1|  212|Caenorhabditis elegans Hypothetical pr...    30   1.2  
U56965-8|AAB52663.1|  314|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z81033-2|CAB02725.1|  263|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AJ011777-1|CAA09770.1|  263|Caenorhabditis elegans FOG-3 protein...    29   3.6  
AC084154-11|AAK29874.1|  350|Caenorhabditis elegans Hypothetical...    29   3.6  
AY008133-1|AAG32086.1|  363|Caenorhabditis elegans heterotrimeri...    28   4.7  
AF077536-9|AAK31414.1|  363|Caenorhabditis elegans G protein, al...    28   4.7  
Z73426-5|CAO78745.1| 1607|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U24123-1|AAA65224.1|  646|Caenorhabditis elegans polyadenylate-b...    27   8.2  
AL032631-4|CAE54917.1|  586|Caenorhabditis elegans Hypothetical ...    27   8.2  
AL032631-3|CAE54916.1|  583|Caenorhabditis elegans Hypothetical ...    27   8.2  
AL032631-2|CAA21572.1|  646|Caenorhabditis elegans Hypothetical ...    27   8.2  
AC024817-3|AAK68524.1|  482|Caenorhabditis elegans Hypothetical ...    27   8.2  

>Z93389-5|CAI79177.1|  212|Caenorhabditis elegans Hypothetical
           protein T13F3.8 protein.
          Length = 212

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
 Frame = +1

Query: 376 SGLLTSNVNF-EPAGTEQKQHSRIQIKKGPNGQ-DYEYQYRXXXXXXEDEVKKEGKNKRQ 549
           +GL T+NVN   PA  E+K+  +++ K   N + + + + +      E+E KKE K + +
Sbjct: 51  TGLTTNNVNIGNPAPEEKKKEEKVEKKPEENKEAEKKDEPKKEEEKKEEEKKKEEKKEEE 110


>U56965-8|AAB52663.1|  314|Caenorhabditis elegans Hypothetical
           protein C15H9.3 protein.
          Length = 314

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
 Frame = -3

Query: 455 FLIWILECCFCSVPAGSKLTFDV-----NRPLFISSI 360
           FL+  L    C+V  GS+L FDV     NRPLF  S+
Sbjct: 37  FLLLSLHFVACTVDVGSRLVFDVPSEILNRPLFRLSV 73


>Z81033-2|CAB02725.1|  263|Caenorhabditis elegans Hypothetical
           protein C03C11.2 protein.
          Length = 263

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 283 QKPLLTTVAPATDSKNFDYIPINFDSIDDINSGL 384
           +KPLLT    A +  N  Y P+  +  DDIN+ L
Sbjct: 153 KKPLLTNDKAALEMVNTMYSPLAREKCDDINANL 186


>AJ011777-1|CAA09770.1|  263|Caenorhabditis elegans FOG-3 protein
           protein.
          Length = 263

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 283 QKPLLTTVAPATDSKNFDYIPINFDSIDDINSGL 384
           +KPLLT    A +  N  Y P+  +  DDIN+ L
Sbjct: 153 KKPLLTNDKAALEMVNTMYSPLAREKCDDINANL 186


>AC084154-11|AAK29874.1|  350|Caenorhabditis elegans Hypothetical
           protein Y22D7AR.1 protein.
          Length = 350

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = +1

Query: 1   PFRKPR*KPGAERRTSPLP*IPARPS---RSQQRHDPRGPPSPYVYWCARPNGRP 156
           P  KP+ KP  +   +P+P +  +P     S+ + +PR  P P      +P  RP
Sbjct: 267 PKLKPKPKPNPKPEPNPMPELKPKPKHKPNSRPKPNPRPKPKPRSKPNPKPKPRP 321


>AY008133-1|AAG32086.1|  363|Caenorhabditis elegans heterotrimeric G
           protein alphasubunit protein.
          Length = 363

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 283 QKPLLTTVAPATDSKNFDYIPINFDSIDDINSGLLTSNVNF 405
           +KPL T +  ATD++N D +   FDS  D+   +    V F
Sbjct: 325 EKPLYTHITNATDTRNIDRV---FDSCMDVIFKISMEKVGF 362


>AF077536-9|AAK31414.1|  363|Caenorhabditis elegans G protein, alpha
           subunit protein 11 protein.
          Length = 363

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 283 QKPLLTTVAPATDSKNFDYIPINFDSIDDINSGLLTSNVNF 405
           +KPL T +  ATD++N D +   FDS  D+   +    V F
Sbjct: 325 EKPLYTHITNATDTRNIDRV---FDSCMDVIFKISMEKVGF 362


>Z73426-5|CAO78745.1| 1607|Caenorhabditis elegans Hypothetical
           protein F40F11.2b protein.
          Length = 1607

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +1

Query: 328 NFDYIPINFDSIDDINSGLLTSNVNFEPAGTEQKQHSRIQIKKGPNG 468
           N+D+   N D+I   + G L+ + +F+ AGT ++  S   ++  PNG
Sbjct: 27  NYDFESGNIDNIPLNDDGPLSPSQDFDLAGTLEEYES-YDLRLSPNG 72


>U24123-1|AAA65224.1|  646|Caenorhabditis elegans
           polyadenylate-binding protein protein.
          Length = 646

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
 Frame = +1

Query: 25  PGAERRTSPLP*IPARPSRSQQRHD----PRGPPSPYVYWCARPNG 150
           PG +++  P P     P + QQ+      P+ PP PY  +  RP G
Sbjct: 520 PGVQQQNVPRP-----PQQQQQQRPAPTGPKAPPQPYQAYQQRPQG 560


>AL032631-4|CAE54917.1|  586|Caenorhabditis elegans Hypothetical
           protein Y106G6H.2c protein.
          Length = 586

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
 Frame = +1

Query: 25  PGAERRTSPLP*IPARPSRSQQRHD----PRGPPSPYVYWCARPNG 150
           PG +++  P P     P + QQ+      P+ PP PY  +  RP G
Sbjct: 460 PGVQQQNVPRP-----PQQQQQQRPAPTGPKAPPQPYQAYQQRPQG 500


>AL032631-3|CAE54916.1|  583|Caenorhabditis elegans Hypothetical
           protein Y106G6H.2b protein.
          Length = 583

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
 Frame = +1

Query: 25  PGAERRTSPLP*IPARPSRSQQRHD----PRGPPSPYVYWCARPNG 150
           PG +++  P P     P + QQ+      P+ PP PY  +  RP G
Sbjct: 457 PGVQQQNVPRP-----PQQQQQQRPAPTGPKAPPQPYQAYQQRPQG 497


>AL032631-2|CAA21572.1|  646|Caenorhabditis elegans Hypothetical
           protein Y106G6H.2a protein.
          Length = 646

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
 Frame = +1

Query: 25  PGAERRTSPLP*IPARPSRSQQRHD----PRGPPSPYVYWCARPNG 150
           PG +++  P P     P + QQ+      P+ PP PY  +  RP G
Sbjct: 520 PGVQQQNVPRP-----PQQQQQQRPAPTGPKAPPQPYQAYQQRPQG 560


>AC024817-3|AAK68524.1|  482|Caenorhabditis elegans Hypothetical
           protein Y54G2A.11a protein.
          Length = 482

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 37  RRTSPLP*IPARPSRSQQRHDPRGPP 114
           R  +P+P  P  P R  QRH PR  P
Sbjct: 339 RALAPIPPAPFSPRRRLQRHVPRHQP 364


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,805,658
Number of Sequences: 27780
Number of extensions: 283575
Number of successful extensions: 767
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)