Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0297
         (625 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          25   0.79 
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    24   1.0  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          24   1.4  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      24   1.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   1.8  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   9.8  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   9.8  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 12/58 (20%), Positives = 24/58 (41%)
 Frame = +1

Query: 346 INFDSIDDINSGLLTSNVNFEPAGTEQKQHSRIQIKKGPNGQDYEYQYRXXXXXXEDE 519
           INF  +   +         FEP  T+ + + R + ++     ++E++        EDE
Sbjct: 147 INFTKLKRHHPRYKRPRTTFEPRATDSRHYDRYKEEESNENYNWEHKETHIDWQPEDE 204


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 283 QKPLLTTVAPATDSKNFDYIPINFD 357
           + P++  V  ATD+ NFD  P + D
Sbjct: 640 EPPIMPRVQNATDTTNFDEYPPDSD 664


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 385 LTSNVNFEPAGTEQKQHSRIQIKKGPNGQDYEYQYR 492
           L+ N  F P  +EQK   R+  +   N +D++  Y+
Sbjct: 91  LSRNAIFTPLNSEQKYEVRMLFELLYNAKDFQTFYK 126


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 385 LTSNVNFEPAGTEQKQHSRIQIKKGPNGQDYEYQYR 492
           L+ N  F P  +EQK   R+  +   N +D++  Y+
Sbjct: 91  LSRNAIFTPLNSEQKYEVRMLFELLYNAKDFQTFYK 126


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 286 FVCAYKVFCFQFSGCLDW 233
           F+C Y+  CF    C D+
Sbjct: 735 FLCRYEAHCFALCHCCDF 752


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 139 VHTSKHRATAGHAG 98
           VH + H A  GH+G
Sbjct: 281 VHHANHHAILGHSG 294


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 289 VFVCAYKVFCFQFSGCLDWSGL 224
           V VC+  V+ FQ  G   W G+
Sbjct: 545 VMVCSAPVWRFQPWGPFTWGGI 566


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,179
Number of Sequences: 438
Number of extensions: 3826
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)