Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0297
         (625 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g09850.1 68418.m01139 transcription elongation factor-related...    32   0.36 
At5g15870.1 68418.m01857 glycosyl hydrolase family 81 protein si...    30   1.4  
At5g13760.1 68418.m01604 expressed protein similar to unknown pr...    29   3.3  
At4g18400.1 68417.m02731 expressed protein                             28   5.8  
At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pf...    27   7.7  

>At5g09850.1 68418.m01139 transcription elongation factor-related
           low similarity to SP|P10712 Transcription elongation
           factor S-II (Transcription elongation factor A) {Mus
           musculus}
          Length = 353

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 17/30 (56%), Positives = 18/30 (60%)
 Frame = +1

Query: 1   PFRKPR*KPGAERRTSPLP*IPARPSRSQQ 90
           P RKPR      RR SP P  P+RPS SQQ
Sbjct: 258 PERKPRPVAPQPRRESPSPAKPSRPSPSQQ 287


>At5g15870.1 68418.m01857 glycosyl hydrolase family 81 protein
           similar to beta-glucan-elicitor receptor GI:1752734 from
           [Glycine max]
          Length = 745

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 1   PFRKPR*KPGAERRTSPLP*IPARPSRSQQRHDPRGPPSPYVY 129
           PF+KP+ +P +     PLP  P+ P  SQQ    R   +P+++
Sbjct: 16  PFKKPKNRPPSPPPPLPLPPSPS-PPPSQQMSSSRQKNTPFLF 57


>At5g13760.1 68418.m01604 expressed protein similar to unknown
           protein (gb AAF63775.1)
          Length = 569

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +1

Query: 28  GAERRTSPLP*IPARPSRSQQRHDPRGPPSP 120
           G  R T+P P   A+P RS  R  P  PP P
Sbjct: 65  GGSRFTTPPPPNLAQPLRSSSRQPPPPPPRP 95


>At4g18400.1 68417.m02731 expressed protein
          Length = 107

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 34  ERRTSPLP*IPARP-SRSQQRHDPRGPPSP 120
           E+RTSP P +P+ P S SQ  H P    +P
Sbjct: 5   EKRTSPEPPLPSPPESSSQPEHPPPETSTP 34


>At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pfam
           PF00400: WD domain, G-beta repeat; similar to WD-repeat
           protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
           sapiens]
          Length = 654

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = -1

Query: 271 KVFCFQFSGC--LDWSGLVDPNLTITYSSPGRGFVISSTSADAHW 143
           KV  +  SGC  +DW+ L D    + Y   G+G +I S +    +
Sbjct: 392 KVRIWNISGCSVVDWADLKDIISAVCYRPDGQGGIIGSLNGSCRF 436


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,825,922
Number of Sequences: 28952
Number of extensions: 253616
Number of successful extensions: 809
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)