Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0296
         (650 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    22   3.8  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   5.0  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   5.0  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    22   5.0  

>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +3

Query: 6   LYFFFSLLMIFFLYLKHR 59
           L FF S L I  LYLKH+
Sbjct: 255 LNFFTSTLEIDNLYLKHK 272


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 578 KNGCLSERFEHRCIATYECTGC 513
           KNG LS++F    ++   C GC
Sbjct: 83  KNGKLSDKFLDDEMSKKSCQGC 104


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 578 KNGCLSERFEHRCIATYECTGC 513
           KNG LS++F    ++   C GC
Sbjct: 31  KNGKLSDKFLDDEMSKKSCQGC 52


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 578 KNGCLSERFEHRCIATYECTGC 513
           KNG LS++F    ++   C GC
Sbjct: 214 KNGKLSDKFLDDEMSKKSCQGC 235


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,951
Number of Sequences: 336
Number of extensions: 2323
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)