Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0296
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0181 - 28225396-28225587,28226009-28226068,28226150-282264...    28   5.6  
05_04_0385 - 20817073-20817321,20817474-20817660,20817851-20817918     27   9.8  

>05_07_0181 -
           28225396-28225587,28226009-28226068,28226150-28226416,
           28227167-28227232,28228164-28228963,28229565-28229673,
           28230391-28232097
          Length = 1066

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 478 KKV*SRRGLKVRHPVHSYVAMHRCSNRSD 564
           +KV  +  + VR PVH++ A HR  N+S+
Sbjct: 458 QKVGEQGSIAVRRPVHTFWANHRGGNQSE 486


>05_04_0385 - 20817073-20817321,20817474-20817660,20817851-20817918
          Length = 167

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = -2

Query: 520 QGVLPLGHDDFKLFYSKKHLVV*LVAIDLVSILILPL 410
           +G+  +G    KLF +KKH +  LV + L  +LILP+
Sbjct: 105 KGLNNIGELSIKLFETKKHDLYDLVYLLLKLVLILPV 141


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,432,321
Number of Sequences: 37544
Number of extensions: 223404
Number of successful extensions: 456
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)