Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0296
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54835| Best HMM Match : Laminin_EGF (HMM E-Value=0.13)              29   2.5  
SB_25538| Best HMM Match : Kinesin (HMM E-Value=0)                     29   4.3  
SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0)                    28   7.6  

>SB_54835| Best HMM Match : Laminin_EGF (HMM E-Value=0.13)
          Length = 625

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
 Frame = -2

Query: 478 YSKKHLVV*LVAIDLVSILILPLNVSNEVSKLSLNY----LTLCRQLILLVPSSVP*VSQ 311
           +  +HL+V +VA+ +++ L++PL +   +  L+  Y    +T+   LIL V S+V   + 
Sbjct: 364 FQGRHLIVSIVALLVLTFLVIPLPI--VIVLLTRGYWKLWMTMSSLLILTVHSNVQPYTS 421

Query: 310 QAENVG*SLHL 278
              NV  SL+L
Sbjct: 422 VRTNVTESLYL 432


>SB_25538| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 711

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 65  KLEAELNRWRSGETVRLEEQVN 130
           K E EL RWR GE V  +EQ +
Sbjct: 275 KYEQELQRWRQGENVPPDEQTS 296


>SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0)
          Length = 2726

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 426  IDTRSIATNYTTKCFLE*KSLKSSWPKGKTPCAFVCSNAPVFKSL 560
            ++ +SIA N+  +     K +K+   K    C  V  N PVF SL
Sbjct: 2628 LEIKSIALNHRDQSLPAMKKIKNQIEKKNRKCTVVEPNDPVFPSL 2672


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,063,724
Number of Sequences: 59808
Number of extensions: 269199
Number of successful extensions: 534
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)