Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0296
         (650 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M24441-1|AAA28652.1|  975|Drosophila melanogaster protein ( D.me...    49   5e-06
AY094959-1|AAM11312.1|  975|Drosophila melanogaster SD02406p pro...    49   5e-06
AE013599-2234|AAF58029.1|  975|Drosophila melanogaster CG7765-PA...    49   5e-06
AF145648-1|AAD38623.1|  448|Drosophila melanogaster BcDNA.GH0838...    28   9.6  
AE014296-3346|AAN12125.2|  448|Drosophila melanogaster CG5498-PB...    28   9.6  

>M24441-1|AAA28652.1|  975|Drosophila melanogaster protein (
           D.melanogaster kinesinheavy chain mRNA, complete cds. ).
          Length = 975

 Score = 49.2 bits (112), Expect = 5e-06
 Identities = 22/34 (64%), Positives = 29/34 (85%), Gaps = 1/34 (2%)
 Frame = +2

Query: 59  VEKLEAELNRWRSGETVRLEEQVNLQEI-EAVTP 157
           VEKLE EL RWR+GETV+ EEQ+N++++ EA TP
Sbjct: 366 VEKLEIELARWRAGETVKAEEQINMEDLMEASTP 399



 Score = 37.1 bits (82), Expect = 0.021
 Identities = 16/17 (94%), Positives = 16/17 (94%)
 Frame = +1

Query: 256 LYQQLDDKDEEINQHSQ 306
           LYQQLDDKDEEINQ SQ
Sbjct: 444 LYQQLDDKDEEINQQSQ 460


>AY094959-1|AAM11312.1|  975|Drosophila melanogaster SD02406p
           protein.
          Length = 975

 Score = 49.2 bits (112), Expect = 5e-06
 Identities = 22/34 (64%), Positives = 29/34 (85%), Gaps = 1/34 (2%)
 Frame = +2

Query: 59  VEKLEAELNRWRSGETVRLEEQVNLQEI-EAVTP 157
           VEKLE EL RWR+GETV+ EEQ+N++++ EA TP
Sbjct: 366 VEKLEIELARWRAGETVKAEEQINMEDLMEASTP 399



 Score = 37.1 bits (82), Expect = 0.021
 Identities = 16/17 (94%), Positives = 16/17 (94%)
 Frame = +1

Query: 256 LYQQLDDKDEEINQHSQ 306
           LYQQLDDKDEEINQ SQ
Sbjct: 444 LYQQLDDKDEEINQQSQ 460


>AE013599-2234|AAF58029.1|  975|Drosophila melanogaster CG7765-PA
           protein.
          Length = 975

 Score = 49.2 bits (112), Expect = 5e-06
 Identities = 22/34 (64%), Positives = 29/34 (85%), Gaps = 1/34 (2%)
 Frame = +2

Query: 59  VEKLEAELNRWRSGETVRLEEQVNLQEI-EAVTP 157
           VEKLE EL RWR+GETV+ EEQ+N++++ EA TP
Sbjct: 366 VEKLEIELARWRAGETVKAEEQINMEDLMEASTP 399



 Score = 37.1 bits (82), Expect = 0.021
 Identities = 16/17 (94%), Positives = 16/17 (94%)
 Frame = +1

Query: 256 LYQQLDDKDEEINQHSQ 306
           LYQQLDDKDEEINQ SQ
Sbjct: 444 LYQQLDDKDEEINQQSQ 460


>AF145648-1|AAD38623.1|  448|Drosophila melanogaster BcDNA.GH08385
           protein.
          Length = 448

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 21/58 (36%), Positives = 28/58 (48%)
 Frame = -2

Query: 550 NTGALLHTNAQGVLPLGHDDFKLFYSKKHLVV*LVAIDLVSILILPLNVSNEVSKLSL 377
           NTG LLH NA   L   H      YS K L   L+A+++  IL L   V   + ++ L
Sbjct: 171 NTGKLLHFNALKTLCKTHG--VPTYSDKDLCACLLALNVRQILGLEFKVEKGIRQIHL 226


>AE014296-3346|AAN12125.2|  448|Drosophila melanogaster CG5498-PB
           protein.
          Length = 448

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 21/58 (36%), Positives = 28/58 (48%)
 Frame = -2

Query: 550 NTGALLHTNAQGVLPLGHDDFKLFYSKKHLVV*LVAIDLVSILILPLNVSNEVSKLSL 377
           NTG LLH NA   L   H      YS K L   L+A+++  IL L   V   + ++ L
Sbjct: 171 NTGKLLHFNALKTLCKTHG--VPTYSDKDLCACLLALNVRQILGLEFKVEKGIRQIHL 226


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,885,105
Number of Sequences: 53049
Number of extensions: 400889
Number of successful extensions: 853
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2765538900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)